HsaEX0009926 @ hg19
Exon Skipping
Gene
ENSG00000177025 | C19orf18
Description
chromosome 19 open reading frame 18 [Source:HGNC Symbol;Acc:28642]
Coordinates
chr19:58477898-58485571:-
Coord C1 exon
chr19:58485467-58485571
Coord A exon
chr19:58483831-58483872
Coord C2 exon
chr19:58477898-58478000
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCCCTTTGATGGCCTTTTAGCTG
3' ss Score
6.93
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCAGTAAACGGTCACAACCACCCAGAAACATCACCAAAGAGCCCAAAGTGTTCTTTCATAAAACCCAGTTGCCTGGGATTCAAGGGGCTGCCTCGAGATCCACGG
Seq A exon
CTGCATCCCCTACGAACCCCATGAAATTCCTGAGGAATAAAG
Seq C2 exon
CAATAATTCGGCATAGACCTGCTCTTGTTAAAGTAATTTTAATTTCGAGCGTAGCCTTCAGCATTGCCCTGATATGTGGGATGGCAATCTCCTATATGATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177025-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=0.067 C2=0.000
Domain overlap (PFAM):
C1:
PF097165=ETRAMP=FE(27.3=100),PF111393=DUF2910=FE(31.2=100)
A:
PF097165=ETRAMP=FE(10.9=100),PF111393=DUF2910=FE(12.5=100)
C2:
PF097165=ETRAMP=FE(26.6=100),PF111393=DUF2910=FE(30.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAAAGAGCCCAAAGTGT
R:
GCTGAAGGCTACGCTCGAAAT
Band lengths:
137-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)