MmuEX6008394 @ mm10
Exon Skipping
Gene
ENSMUSG00000030385 | 2900092C05Rik
Description
RIKEN cDNA 2900092C05 gene [Source:MGI Symbol;Acc:MGI:1920340]
Coordinates
chr7:12512816-12550583:+
Coord C1 exon
chr7:12512816-12512908
Coord A exon
chr7:12515456-12515497
Coord C2 exon
chr7:12550484-12550583
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCAATGGCCTTCTAGCTA
3' ss Score
7.17
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAGTAGACAGTTAGAAACTTCTAAATCTTCTATGGGACAGCCCAGAGGCTTACTTGCAATACTTCGACCAACAGAAGTAATAATCCCAGCAC
Seq A exon
CTAGACCAACTGTGAAGCCATCAGAATTCGATACAAATAAAG
Seq C2 exon
TAATTCCACGTAGGCCTGGACTTGTTCATGTAATTTCAGTTTCAAGTATAGCCTTTGTCATTGCCCTGCTATGTGGGCTCATGCTCTCCTACGTGATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030385-'1-8,'1-3,5-8=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGGCTTACTTGCAATACT
R:
GAGAGCATGAGCCCACATAGC
Band lengths:
140-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types