RnoEX0001247 @ rn6
Exon Skipping
Gene
ENSRNOG00000019280 | AABR07002093.1
Description
NA
Coordinates
chr1:66199835-66212212:-
Coord C1 exon
chr1:66212117-66212212
Coord A exon
chr1:66203657-66203698
Coord C2 exon
chr1:66199835-66199935
Length
42 bp
Sequences
Splice sites
3' ss Seq
CCCCTCCAATGGCCTTCTAGCTA
3' ss Score
7.17
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGAGTAGACAGTTAGAAACATCTGAAACTTCTTCTATGGGACAATCCAGAGGCTTCCTTTCAATACTTCGACCAACACAAGTAAAAATCCCAGCAC
Seq A exon
CTAGACCAACTTTGAAACCATCAGAATTCCACACAAATAAAG
Seq C2 exon
ATTTTTTTGAAGAGGGAGAAGTGAAGAGATACATTCAAGAGGGAGGTGCTGAGACAAACTTCCCCTCGGGGTAAAAGATTCATTAGGTGAGTGGCTTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019280-'2-4,'2-3,3-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.533 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAATCCAGAGGCTTCCT
R:
ACCTAATGAATCTTTTACCCCGAGG
Band lengths:
147-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]