HsaEX6096975 @ hg38
Exon Skipping
Gene
ENSG00000177025 | C19orf18
Description
chromosome 19 open reading frame 18 [Source:HGNC Symbol;Acc:HGNC:28642]
Coordinates
chr19:57961391-57972504:-
Coord C1 exon
chr19:57972463-57972504
Coord A exon
chr19:57966530-57966632
Coord C2 exon
chr19:57961391-57961551
Length
103 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCTTTCTTTTTAGCAA
3' ss Score
11.01
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
CTGCATCCCCTACGAACCCCATGAAATTCCTGAGGAATAAAG
Seq A exon
CAATAATTCGGCATAGACCTGCTCTTGTTAAAGTAATTTTAATTTCGAGCGTAGCCTTCAGCATTGCCCTGATATGTGGGATGGCAATCTCCTATATGATATA
Seq C2 exon
TCGACTGGCACAGGCTGAGGAAAGACAACAGCTCGAGTCACTTTATAAGAACCTCAGGATACCGTTATTAGGAGATGAAGAAGAGGGCTCAGAGGACGAGGGTGAGTCCACGCACCTACTTCCAGAGAACGAAAATGAGCTGGAAAAGTTCATCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177025_MULTIEX1-3/5=1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.311 A=0.000 C2=0.345
Domain overlap (PFAM):
C1:
PF097165=ETRAMP=FE(10.9=100)
A:
PF097165=ETRAMP=FE(26.6=100)
C2:
PF097165=ETRAMP=PD(4.7=10.9)
Main Skipping Isoform:
ENST00000314391fB10850
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCATCCCCTACGAACCCC
R:
TGAGTGGATGAACTTTTCCAGCT
Band lengths:
202-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains