RnoEX6001175 @ rn6
Exon Skipping
Gene
ENSRNOG00000019280 | AABR07002093.1
Description
NA
Coordinates
chr1:66189220-66203698:-
Coord C1 exon
chr1:66203657-66203698
Coord A exon
chr1:66193456-66193555
Coord C2 exon
chr1:66189220-66189367
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTATTTTGTCACAGTAA
3' ss Score
7.8
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CTAGACCAACTTTGAAACCATCAGAATTCCACACAAATAAAG
Seq A exon
TAAGTCCACATAGACCTGGTCTTGTTCATGTAATTTCAGTTTCAAGTATAGCCTTTGTCGTTGCCCTGTTATGTGGGCTCATGATCTCCTATGTGATACA
Seq C2 exon
TCGACTGGTAAAAGCTGAGGAAAAACAGCAGCTTGCAATGTTGTATGAAAATGTCGAGATTCCACTTTTAGAAGAGAAAGATTCTTCTGAAGATGAGTCTTCTCAGCTGGATCCAGAGAATGAGGAGCTGGGAAAATTCATTGGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019280-'3-8,'3-6,7-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.000 C2=0.360
Domain overlap (PFAM):
C1:
NO
A:
PF113913=DUF2798=PU(81.2=76.5),PF062957=DUF1043=PU(28.1=47.1)
C2:
PF113913=DUF2798=PD(15.6=10.0),PF062957=DUF1043=PD(70.2=80.0)
Main Skipping Isoform:
ENSRNOT00000026074fB12
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAACTTTGAAACCATCAGA
R:
TGAGCCAATGAATTTTCCCAGCT
Band lengths:
188-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]