MmuEX0001270 @ mm9
Exon Skipping
Gene
ENSMUSG00000030385 | 2900092C05Rik
Description
RIKEN cDNA 2900092C05 gene [Source:MGI Symbol;Acc:MGI:1920340]
Coordinates
chr7:13100805-13140124:+
Coord C1 exon
chr7:13100805-13100846
Coord A exon
chr7:13135833-13135932
Coord C2 exon
chr7:13139967-13140124
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTATGTTTTCACAGTAA
3' ss Score
8.25
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
CTAGACCAACTGTGAAGCCATCAGAATTCGATACAAATAAAG
Seq A exon
TAATTCCACGTAGGCCTGGACTTGTTCATGTAATTTCAGTTTCAAGTATAGCCTTTGTCATTGCCCTGCTATGTGGGCTCATGCTCTCCTACGTGATATA
Seq C2 exon
TCGACTGGTAAAAGTTGAGGAAAAACAGCAGCTTGCAATGTTGTATGAAAATATCGAGATTCCACTTGTAGATGAGAAAGAGGCCTCTGAAGATGATGGTTATGATGAATCTCAGTTGCATCCAGAGAATGAGGAGCTGGGAAAATTCATTAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030385-'3-6,'3-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.000 C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAACTGTGAAGCCATCA
R:
AGCTAATGAATTTTCCCAGCTCCT
Band lengths:
195-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: