HsaINT0024070 @ hg38
Intron Retention
Gene
ENSG00000138658 | ZGRF1
Description
zinc finger GRF-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25654]
Coordinates
chr4:112609379-112612588:-
Coord C1 exon
chr4:112612524-112612588
Coord A exon
chr4:112609430-112612523
Coord C2 exon
chr4:112609379-112609429
Length
3094 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
ATTAATATTCTATTCCTAAGATA
3' ss Score
3.7
Exon sequences
Seq C1 exon
TGAGGAAACCATTTATTACAGTAGTTTCACCAAAGTCTCCTCATCTGCACAAGGATTCTCAACAG
Seq A exon
GTACAGGTTTTTTTTCTAAGAGTATGTTTTTTTTATTTTGATAAGAATGTTCTATAATTTGTAATAGAATTATAGTAATACAGTCCCAAGCTATCTTGGTTCATGACTCCTGCTGTATCTCAGTAATTTTTCATTGCCTTCCTCAGCCAAAAGAAATGCCTAACAGTTTCATTTATTATGTAGTTAATAGTATTAAGCAACTCAAGTATTTCCTAGTAACTTTGTAAGCATTTTGTTTGTTAAAAAACACAGTTACATGGCTGGACGTGGAGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGCAGATCACTTGAGGTCAGGAATTCGAGACCAGCCTGGCTGATGTGGTGAAACCCCATCTCTACTAAAAACACAAAAATTAGCCAGGCATGGTGGCATGCACCTGTAATCTCAGCTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCATGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAGACTCCATCTCAAAAAAAAAAAACAAAACCCCACAGTTACTAATGGAATGTGTACCTCTGTTGGGCACTATACAACTTCTCAAACCTTGGAATAGATTAGGTAACACCACCTTATTTCTTGTTACACGTTGATTTTCTCATGATAATTGCTTTTTATCACAGCAGTTTCTCAGAACCCAGCTTCACAAAGGTGCAATGTCATTGAAAGAAATGTAGCAAGATCTGATGTAGAAACAGACCTGGAGTTAGTAGTTCATTAGGTGTCAGACAGATGTCAGGTGACACTGTTACCCTACATATAAAACACCTTATGGAGCTCCTGTGAGTTCATTGTGCCACCTCAGGGTACCTTGTTGCACAGTTTGGGAACCATGGTAGTTATATAAAAAATAATAGTTCTAATTAGGATGAATTGAAATTCTAGGATAAATCATCTAGATGAGTGTTTCTCACTCAATGGGGATGCTGTTAGCACTTTTGGAGGGTCAGTTCTTTCATTATATGGCACTGGTCTTTCTACAGACATGTTTGGAACAAAAGAAAGTAGAATGTTTCACTTGCCTCCATTTTATTTTTGTTTTTATTTATTTTGAGATGGAGTCTCTCTCTTTCGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAGCCTCCATCTCCCAGGTTCAAGTGATTCTCCTGCCCCAGCCTCCCAAGTAGCTGGGATTACAGGTGCGTGCCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTGGCCAGGCTGGTCTCCAACTCCTGACCTCAAGTGATCCACCCGCCTCAGGCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCAGGCCCGGCCTCACTTGCCTCCATTTTATATCTTACTTTATTCTTTATGTTACTGGTCCTTTTTTTCCCCTTTTAATAATGTTGATTTTTTTTTCTTTTTTCTAAATACAGAAAACAGTGAAGAAAAAAATAAAACCTACCCTGCCTCTCAGAATATTTATTAATGTTTCCAGATTTTTTTGTGTCCAGTTAAAAAAAATGGTTAGATTGATGTATATAAATAGTTTTATATCCTTTCCCCTTAATATCGTTGTATTATCTTACATTATTAATAATTCTTCTTAAACATACTTTTTAAAAGTTATTTACCATCCATCCTATGGCTATCTTGTGCTTTGGACAAATAGTTCTCTGTTTTGGTCATTTAAATAATTTCCAGCATTTTGCTATTATAAGTAACACTTTAATAAATGTTTTTACACATAAATCATTGTTTGCATTTTAAGTTTTTTCCTTAGATTTGATTCCAGAAGTAGAAGTAATTATTTGGAAGGCTAGGAACAACTTTCTTTCTTGGGTTCTTGATATTTTCTTTTTTTTTTCTTTTCTTTCTTTTTTTTGAGACGGAGTCTTGCTCTATTGCCCAGGCTGGAGAGCAGTGGCATGATCTCGGCTTACTGCAGCCTCTGCCTCCTGGGTTCAAGCAATTCTCCTGCCTTAGCCTCCTGGGTAGCTGGGACCACAGGCTCACGCCACCATGTGTGGATAATTTTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTTGCCAGGCTGGTCTCGAACTCCTGTCCTCAGGTAATCTGCCCACCTCGGCCTCCCAAAGTGCTGCGATTATAGGCATGAGCCTCCGTGCTTGGCCATGATATTTTCAAATATAAAAATTTTAATGTTTTACAATTAGAATATTTATTTTACTTCATTTTTACTAGTACCGTTGTAAGCTTTTTAAATTCTTGCTAAATGACAATACTGTTTTATCAGGATTTTACTTTTTATGTATGTATTTTTTTCTGAGACAGGTTATTGCTCTGTTGCCCAGGCTGGACTGCAGTAGCGTGATTGGCTCCTGCAGCCTTGACCTCCTGGGCTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCATGCCACCATACCTAACTAACTGTTACATTTTTTGTAGAGATGGGGTTTCACTATGTTCCCCAGCTGGTCTCAAACTCATGGGCTCAAGCAGTCTTCCAGCCCCAGCCTCTAAAGTGTTGGAATTACAGGTGTGAGCCACAATGCCTGGCCAGTTTTTATTTCATATTAGTGATGGTGTTCTAGTATTTCTTTTTTTTTTTTCTTCGTTTTGAGATGGAGTCTTGCTCTTGTCGCCCAGACTGGAGTGCAGTGGCGCAATCTTGGCCCACTGCAACCTCCTCCTCCCGGGTTCAAGTGATTCTCCTGCCTAAGCCTCCTGAGTAGCTGGGGTGTGCCACCACACCCGGCTAGTTTTTGTATTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGGTGGTCTCGAACTCCTTACCTCAGGTGATCCGCCCACCTTGGCCTCCCAGAGTGCTGGGATTACAGGTGTGAGCCACCATGCCCAGCCCTAGTATTTCTTAAGTCTAATAGAAATTTATATTTTTGTTTTCTAAATTATTATTGCCTATTAGTTTATCTAAAATTAATATTCTATTCCTAAG
Seq C2 exon
ATACTAAAAGAAGATGAAGTTGAACTAAGTGAACCACTTCAGTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658:ENST00000309071:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=0.784
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development