HsaINT0024231 @ hg38
Intron Retention
Gene
ENSG00000106804 | C5
Description
complement C5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr9:120969061-120970251:-
Coord C1 exon
chr9:120970170-120970251
Coord A exon
chr9:120969119-120970169
Coord C2 exon
chr9:120969061-120969118
Length
1051 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTCTTGTCTTATGTGCCAGCAT
3' ss Score
5.89
Exon sequences
Seq C1 exon
GTAACAACTGTAGTTCACAAAACCAGTACCTCTGAGGAAGTTTGCAGCTTTTATTTGAAAATCGATACTCAGGATATTGAAG
Seq A exon
GTAAAAACAGCAGGATTTACGCTGTAATTTTGGCTAAAAATAAAGCATGTGTATAAATAGAGAGCTTCTCTGATTAGTAAAAATGTGCTTACTCAAAAAGTGAAATTTCTTAACCAAATACTTTAGCAGGTTGACATCCAAGTAAATATTACTTCCATTTTTTACAATAGATAACTCTTTAATATAGTCGGAAGCTAATATTAAATAACAATGACTAAGCTAAATGTATTTGCTATTGATCAATAAATTGTTTTGACTATGTTATTTTTAAAGAGTGTAACTAGTTGTAAAGCCACATTAAGGTCTAATTCCAGAACCAGGAATTTCTGTTACTTTTGTGTTAGCCTTCCAATCTGGGACCTTGAATTCTCTTATCACCCTGTTAGTTTTCCATCCCTTAGCCTTTCTGTATTCCAAGGGGCCCAGAAAATAAACATTTCTCTGCCTCCATCTTTAACTTAGTCTCTCCTGTACCCCTTTCTTTTTTAGTCTCTCCTGTACCATCCTTTCTTTAAATGTACCCCTGACCCTTTTATTTAACCCAAGGCCCTCACATCCCTCTGCTGGTTGGTTCTCCCTTCCTGGTCCAAAAGCAAGTCCACTTGCACACTCCAGTCCTCCTGGTCTCCCCATTGCCTCCAGGGTCAGAATGAATGTTGCTGCCTCTGCCCTGATATTTTCCATCTATTGCTCAGAAGCCTGTTCCTACAGGAAACTTCCCAACTACCAGCAAATTAAGGCATCTGTTCTTCCTCCCTCCAACATCCCCCAAACATATTACCAATACATATTTATCTTTAATAATTTCTTCATTAAATTATAAGTTATTTGAGAGCAATGAACTGTTAATTATTTAAAGACTTCCTGGTATTGTCAATAGCCATGAATTTCCATTAGAACCACTGAAAGTATCTAAACTTCCAAATCACAAATCATTTTTAAGTGTGTTCAAAGATTTGCTCATTAATGATTCTGTTCTGACAGGTTCCAAAGCAGCTGAAAACAGTTTACTCTTATATTTGTCTGTTTGTTTTCTTGTCTTATGTGCCAG
Seq C2 exon
CATCCCACTACAGAGGCTACGGAAACTCTGATTACAAACGCATAGTAGCATGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804:ENST00000223642:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development