MmuINT0076156 @ mm9
Intron Retention
Gene
ENSMUSG00000026874 | Hc
Description
hemolytic complement [Source:MGI Symbol;Acc:MGI:96031]
Coordinates
chr2:34850482-34851617:-
Coord C1 exon
chr2:34851536-34851617
Coord A exon
chr2:34850540-34851535
Coord C2 exon
chr2:34850482-34850539
Length
996 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGTATTTCTCTGACTGCCAGCAT
3' ss Score
4.92
Exon sequences
Seq C1 exon
GTAAAAACTGTGGTTCACAAAATTAGTGTCTCTGAGGAATTTTGCAGCTTTTACTTGAAAATTGATACCCAAGATATTGAAG
Seq A exon
GTAAGGCAGCTTAATGTGTGAAGTGTTTTAGCTACACAGTAAAAACGCCAAGGAGAGAGTGTCCTGAATTAGGAAACATGTGCTTGTGCAAAAACAAACAAACAAAACAAAAACACAAAATTTCTTCATCTAGTTATTAAGTAGGGTGGTATCCAAGTAACATTACTGCCATTTATTACAATAGATGTAATAATTTTACATATCATTGTAGCTACCATTACAAATGAATATCAAATGATAGAGCAACTAAACTGTATACATTTGGTACTGCTACTTTGTAATTGGTGCTTTTAAAGAATGTAGCAGGTTGTACCGAATGTAGCAGGTTATAAGGCTCAGGGATGCTTTGACATCCAATTGCCATTACATGTGTAAGGATTCTATTTCAGGAAACCTCCTTCTCTCCCAGGTTTCTTTATAACGTCATTCATCTCCACCCCGCCCACGTTGTCCTTGCTGTTTCTCTAGTACTTATGGTCTTTTGAAAAATGTGCTTCCCCCACCCCACCTTTCTTCAAATACACAACCTTCCCTCACCTCAGCTAATAGGCCCGCTTGTCCATGTCCAAAGCCAAGTTCACCTGTACGTTCCTGCCCTCCTCCTCTGACCTTTGCTCCAGGGTCACAATGCCCTCTGATACCTTCCTCATCCGTAACTTGGGCCTGTTCCTTCAGGAAACGTCTACACTAGCAAATGCAGCTCTCTCCATCTTCTTTCCAGATTCCCCAAAAGCATTGCCCACTTGTACTTACCTCCTGGGGGCGGGGGGGTGAGAGATTTGAGAGTAGAGCTTGTCTCCAGCAAAGGAGACATTCTGCTGTGGTCAGTAGCTTTAAAGTCTCCACAAATGCCAACTTCCAGATCACAAATCATGTTTAAGTATGTTTAGAGACTTTCTCATTAACAAGTCTATCAGAACATTCTCCAAAACAACTTTAAAAAGAAACATTTACTTCCCACTTTGTAATGTGTTTGTGTATTTCTCTGACTGCCAG
Seq C2 exon
CATCCAGCCACTTCAGGCTCAGTGACTCTGGATTCAAGCGCATAATAGCATGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026874-Hc:NM_010406:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: