HsaINT0024239 @ hg19
Intron Retention
Gene
ENSG00000106804 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:1331]
Coordinates
chr9:123797081-123800229:-
Coord C1 exon
chr9:123800159-123800229
Coord A exon
chr9:123797173-123800158
Coord C2 exon
chr9:123797081-123797172
Length
2986 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
GTGTTTGTTTTTATTTACAGGAT
3' ss Score
11.31
Exon sequences
Seq C1 exon
TAAAAGTTAGAGTTTATTCGTTGAATGACGACTTGAAGCCAGCCAAAAGAGAAACTGTCTTAACTTTCATA
Seq A exon
GTAAGTATTTTATTTATTTAAATAATACTTTAATTCATTTTTCAGGACAAGAATCTCATTTCATAACCCTGTCCTCACACTACACTAAATCATTCAATGTTCCATAAATGGTTATTGAACATCTGCAATGAGTATAGAATCATAGATCTATACCTCTGTAATACACGTATGTGAAAGGCTCATACAAATTAAATTTCAATAACTTGAAGGATTTTGAGCTAAACCATTTAAGTACAATCTTGCTGATTTATTTTTTAAAGAACACCCACTGGCCGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACTAACCTGGCCAACATAGTGAAACCTCATCTCTACTAAAATACAAAAAATTAGCTGGTGCAGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGGGAATTGCTTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGTGACAGTGTGAGACTCCATCTCAAAAAAGAAAATCTAAAAAAAAAAAAAAAACCAAAAAACAAAAAACCACCCACCAATCACTAAGAATTGACTGAATACCCATTTAACTATAAGATATACATAATGGATATATCTATTATGTATTTATTATGTGCAAAAGAACTATATTTAATGGTACTTACTCTTAAGGAACTTAGAGTTTAATAACTATTATACTAACACAAAAAATCTTGCTAAATCATGAGTTAAAGATTGGCAGTAATTCACCATTTATCAGACATGACATATGTAACAGACGCTGTGCATTGAACTCCCATGATCTCATCTAATTTGTGTCACATACCCCAAACACTTTTGTGAGGAAATAAAATAATACAACTAGTTATAACTGCTCAGTTATTAACAGTAGGTATACTACTAATGGTCCTTCAATATAGGCTGCAGCACTTTTGCTGCTACTCAAAAAAAAAACCAAAAAATAAAAATAAAAACTTATCAGAATGCAGGTGCAAAAGCATAGATACTACAGAACAAAACCATACTAAAATATAAAACAAATAAATTATACAGTAGGACAAATACCATGAGCTCAGAGGGAAGACCAATGAGAGGTGAGAGTGGGGGTGATACACATCCTTCTCTGGAACGGAGTAGTTAAAGGGAACCCTGAGTTGGGTGTTAATGAAAGGAATTGACATAAATTATTTAAAAATAGTGAAGACCATCCATGTAAGAAACAGTGTGAGTTAAGCTATGGGGGCAAGAAGAAATAAAAAAAAATGAAGCTAGTAAATAAACTGATTGACTGATAGAATGTCTGAAAGAGAACTAAGGAGAGCAATGTCAGCTCAAATGCCCTTTTTCTATCAGGGAATGATAGGGGTGTGGATGTATGCTCTTTATCCAACGTCTTCATGGTTGAACTTAAGTGATGCAGAATCATGGCATAACCTGCAGAAAAATGAATGTCAGTCATCTCTTGTAAGAGCTGCCCCAGGAAGAAAAGATTGAGAAAGCTGATCCCAGAGCCTTAAGGAGTTAATATAGAGGAAGTATCCTCAAAATAGTACCTGAGAAAGATGATCTTAGAAGAATTGTGCACAATGGATAGTGCGATGAAGAAGAGCCATAAAAATACTCAGCTACAAGTATAATTCTTGTTCAAAATAGGCTTCTGTAAGTTTTACAATTAATTACGAAATAAAACCTCTAAAATCCAACTGTGAATTTCAGTCATGGTAAATGGTGCTAAGATTTTTTGCTTTGGGTTTTTTGTTGGTTTGTTTGTTTTTGTTTGTATGTTTTTGACAGGGTCTTGCTCTGTCACCAAGGCTGGAGTGCAGTGGTGTGATCATAGCTCACTGTAGCCTCAAACTCCTGGGCTCAAGCCATCCTCCCACCTCAGCTTCCTGAGTAGCTAGGACTACAGGCACCCATCACCACACCCTGCTAACTCTTTAAACATTTTTTTGTAGGCTGGTCAGTGACTCATGCCTGTAATTGTAATCCCAGCACTTTGGGAGGCTAAAATGGGAGGATTGCTTGAGCTCAGGAGATTGAGACCAGCCTGGGCAACCTGGAGAGACCTCATCTCTACTAAAAATTAAAAAAAAAAAAATAGCTGGGCATGGTGGCATGTGCCTGTGGTCCTGGCTACTTGGGAGGCTGAGGTGGGAGGATTGCTTGAGCCTGTGAGTTCAAAGCTGCAGTGAGCTATGATCACACCACTGCACTCCAGCCTGGATCACAGAGCAAGATCCCTGTCTCAAAAAAGTTTTTTGTACAGATAGGGGCCTCACTTATGTTGCCTGCTATGTTTATGTGTTGAGTTAAGGCTGAATTGGACCCCCATGTGTAGTCCAAAGAAAGTCAAAACCTCATTTCAATTATTTGCTAACCCAAACACAAAATTAAGTTTATGGGGAAGCTTTACGAGAACTGTCAAGTTTGTTTAACCATTTGAGAGTTTTACCAAGCTGAAAAATGCCCATACTATACATTTATAAAACATCTGGCTAAAAAATATAATTCATAGAATATTTGCTTTTGAAAGCTTTAAATGAACATATATAAAAATTAGATTCTGGTGTTTATAAAGCCAACAAAATTCACATTTAGTTTATCAAAAACATCATTGTTTGTTTGTTTGTTTGTTTGTTGTTGTTTTTACGTGTTGTTACACTTCATCTTTTAGATGTACAACGAGAGTTGAGTCTCTTCAAGATAATGAGGAGAGATGGGGAAGATTGGAAAAAGAAGAAGGGAAATGGCTGAAATGAACCATATTTCCCTTCTATAACATTTAACAGATCTTCATCCTTCATATTTAATTTGAAGACATGGGTATTTGTCTTCAAATATTTGATCTATAAATATTTTGTACATCAAAGATTGTATAATCAGTTAAATTTTTTAAAATGTAGTTTCTGGCCTTTGAGGGTGTTTGTTTTTATTTACAG
Seq C2 exon
GATCCTGAAGGATCAGAAGTTGACATGGTAGAAGAAATTGATCATATTGGAATTATCTCTTTTCCTGACTTCAAGATTCCGTCTAATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804-C5:NM_001735:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(24.2=100)
A:
NA
C2:
PF0183514=A2M_N=FE(31.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)