GgaINT0126357 @ galGal4
Intron Retention
Gene
ENSGALG00000001565 | C5
Description
complement component 5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr17:8339513-8340165:-
Coord C1 exon
chr17:8340095-8340165
Coord A exon
chr17:8339605-8340094
Coord C2 exon
chr17:8339513-8339604
Length
490 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TCTTCTGTTGTGATTTCAAGGAT
3' ss Score
8.27
Exon sequences
Seq C1 exon
TGAAAGTCAGGGTTTACTCTCTGAACGAAGAACTGCAGCCAGCTCGGCGAGAAACTGTCCTAACTGTTGTG
Seq A exon
GTATGTTGTAATTGAATTTAATTTTAATATTTCATAGATCACAAGTATAAGAATCATAGTTATATAGGAAAGTGATGCTATAGATATACAAGAAAACTGTTAGATAAATGTTTTTGCAGGTAGCCAGATATCTTTTGGAAGATTTGAAAAGGACTTTGCACACTTAGATTTTTTTCAGTTTTGTGATGTAAAGCTATTACAGAATGGAGAAAAGAAAAAGCACAAGTTATCTTTAATATCTAGGGAGACAGTTTGTGAGAGAATTTTGATAACGTATGATTTTCATGCAATTGTTTATTTCATTTAAGATAGAAAACTTATCAGTAGCTCCTGTACTGTTTTTTTTTTTATCCCCAACAATAGTTGTCGTTCTTATAGTAACTTTCTAGAAAACGATGTCATGCACAGGCTCCCACTGAGGTCACTGAATTGAGATTTTTCCTTTTGCTCAGAATGATTTCTGCTAATTCTCTTCTGTTGTGATTTCAAG
Seq C2 exon
GATCCAGATGGAGTAAAAGTGGATATCATAGAAGAAAACGACTTTACTGGAATAGTTTCTTTTCCTGATTTCAAGATTCCTCCTAATCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001565:ENSGALT00000002379:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(24.2=100)
A:
NA
C2:
PF0183514=A2M_N=FE(31.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]