HsaINT1005902 @ hg38
Intron Retention
Gene
ENSG00000106804 | C5
Description
complement C5 [Source:HGNC Symbol;Acc:HGNC:1331]
Coordinates
chr9:121034803-121037951:-
Coord C1 exon
chr9:121037881-121037951
Coord A exon
chr9:121034895-121037880
Coord C2 exon
chr9:121034803-121034894
Length
2986 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
GTGTTTGTTTTTATTTACAGGAT
3' ss Score
11.31
Exon sequences
Seq C1 exon
TAAAAGTTAGAGTTTATTCGTTGAATGACGACTTGAAGCCAGCCAAAAGAGAAACTGTCTTAACTTTCATA
Seq A exon
GTAAGTATTTTATTTATTTAAATAATACTTTAATTCATTTTTCAGGACAAGAATCTCATTTCATAACCCTGTCCTCACACTACACTAAATCATTCAATGTTCCATAAATGGTTATTGAACATCTGCAATGAGTATAGAATCATAGATCTATACCTCTGTAATACACGTATGTGAAAGGCTCATACAAATTAAATTTCAATAACTTGAAGGATTTTGAGCTAAACCATTTAAGTACAATCTTGCTGATTTATTTTTTAAAGAACACCCACTGGCCGGGCGTGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACTAACCTGGCCAACATAGTGAAACCTCATCTCTACTAAAATACAAAAAATTAGCTGGTGCAGTGGCAGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGGGAATTGCTTGAACCCGGGAGGCAGAGCTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGTGACAGTGTGAGACTCCATCTCAAAAAAGAAAATCTAAAAAAAAAAAAAAAACCAAAAAACAAAAAACCACCCACCAATCACTAAGAATTGACTGAATACCCATTTAACTATAAGATATACATAATGGATATATCTATTATGTATTTATTATGTGCAAAAGAACTATATTTAATGGTACTTACTCTTAAGGAACTTAGAGTTTAATAACTATTATACTAACACAAAAAATCTTGCTAAATCATGAGTTAAAGATTGGCAGTAATTCACCATTTATCAGACATGACATATGTAACAGACGCTGTGCATTGAACTCCCATGATCTCATCTAATTTGTGTCACATACCCCAAACACTTTTGTGAGGAAATAAAATAATACAACTAGTTATAACTGCTCAGTTATTAACAGTAGGTATACTACTAATGGTCCTTCAATATAGGCTGCAGCACTTTTGCTGCTACTCAAAAAAAAAACCAAAAAATAAAAATAAAAACTTATCAGAATGCAGGTGCAAAAGCATAGATACTACAGAACAAAACCATACTAAAATATAAAACAAATAAATTATACAGTAGGACAAATACCATGAGCTCAGAGGGAAGACCAATGAGAGGTGAGAGTGGGGGTGATACACATCCTTCTCTGGAACGGAGTAGTTAAAGGGAACCCTGAGTTGGGTGTTAATGAAAGGAATTGACATAAATTATTTAAAAATAGTGAAGACCATCCATGTAAGAAACAGTGTGAGTTAAGCTATGGGGGCAAGAAGAAATAAAAAAAAATGAAGCTAGTAAATAAACTGATTGACTGATAGAATGTCTGAAAGAGAACTAAGGAGAGCAATGTCAGCTCAAATGCCCTTTTTCTATCAGGGAATGATAGGGGTGTGGATGTATGCTCTTTATCCAACGTCTTCATGGTTGAACTTAAGTGATGCAGAATCATGGCATAACCTGCAGAAAAATGAATGTCAGTCATCTCTTGTAAGAGCTGCCCCAGGAAGAAAAGATTGAGAAAGCTGATCCCAGAGCCTTAAGGAGTTAATATAGAGGAAGTATCCTCAAAATAGTACCTGAGAAAGATGATCTTAGAAGAATTGTGCACAATGGATAGTGCGATGAAGAAGAGCCATAAAAATACTCAGCTACAAGTATAATTCTTGTTCAAAATAGGCTTCTGTAAGTTTTACAATTAATTACGAAATAAAACCTCTAAAATCCAACTGTGAATTTCAGTCATGGTAAATGGTGCTAAGATTTTTTGCTTTGGGTTTTTTGTTGGTTTGTTTGTTTTTGTTTGTATGTTTTTGACAGGGTCTTGCTCTGTCACCAAGGCTGGAGTGCAGTGGTGTGATCATAGCTCACTGTAGCCTCAAACTCCTGGGCTCAAGCCATCCTCCCACCTCAGCTTCCTGAGTAGCTAGGACTACAGGCACCCATCACCACACCCTGCTAACTCTTTAAACATTTTTTTGTAGGCTGGTCAGTGACTCATGCCTGTAATTGTAATCCCAGCACTTTGGGAGGCTAAAATGGGAGGATTGCTTGAGCTCAGGAGATTGAGACCAGCCTGGGCAACCTGGAGAGACCTCATCTCTACTAAAAATTAAAAAAAAAAAAATAGCTGGGCATGGTGGCATGTGCCTGTGGTCCTGGCTACTTGGGAGGCTGAGGTGGGAGGATTGCTTGAGCCTGTGAGTTCAAAGCTGCAGTGAGCTATGATCACACCACTGCACTCCAGCCTGGATCACAGAGCAAGATCCCTGTCTCAAAAAAGTTTTTTGTACAGATAGGGGCCTCACTTATGTTGCCTGCTATGTTTATGTGTTGAGTTAAGGCTGAATTGGACCCCCATGTGTAGTCCAAAGAAAGTCAAAACCTCATTTCAATTATTTGCTAACCCAAACACAAAATTAAGTTTATGGGGAAGCTTTACGAGAACTGTCAAGTTTGTTTAACCATTTGAGAGTTTTACCAAGCTGAAAAATGCCCATACTATACATTTATAAAACATCTGGCTAAAAAATATAATTCATAGAATATTTGCTTTTGAAAGCTTTAAATGAACATATATAAAAATTAGATTCTGGTGTTTATAAAGCCAACAAAATTCACATTTAGTTTATCAAAAACATCATTGTTTGTTTGTTTGTTTGTTTGTTGTTGTTTTTACGTGTTGTTACACTTCATCTTTTAGATGTACAACGAGAGTTGAGTCTCTTCAAGATAATGAGGAGAGATGGGGAAGATTGGAAAAAGAAGAAGGGAAATGGCTGAAATGAACCATATTTCCCTTCTATAACATTTAACAGATCTTCATCCTTCATATTTAATTTGAAGACATGGGTATTTGTCTTCAAATATTTGATCTATAAATATTTTGTACATCAAAGATTGTATAATCAGTTAAATTTTTTAAAATGTAGTTTCTGGCCTTTGAGGGTGTTTGTTTTTATTTACAG
Seq C2 exon
GATCCTGAAGGATCAGAAGTTGACATGGTAGAAGAAATTGATCATATTGGAATTATCTCTTTTCCTGACTTCAAGATTCCGTCTAATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106804:ENST00000223642:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=FE(24.2=100)
A:
NA
C2:
PF0183514=A2M_N=FE(31.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains