HsaINT0025318 @ hg38
Intron Retention
Gene
ENSG00000160345 | C9orf116
Description
chromosome 9 open reading frame 116 [Source:HGNC Symbol;Acc:HGNC:28435]
Coordinates
chr9:135495181-135498663:-
Coord C1 exon
chr9:135498585-135498663
Coord A exon
chr9:135495570-135498584
Coord C2 exon
chr9:135495181-135495569
Length
3015 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ATTTTCCCAACAACTTGCAGCGG
3' ss Score
7.08
Exon sequences
Seq C1 exon
GACCCAGAAGGCTGTCTCCGTGTACAGGACCAGTAACCAGGCTTACGGGAGCAGAGCCCCCACCGTGCACGAGATGCCT
Seq A exon
GTAAGTGGGATGCAAGACCGGGCATGGGGGGCAGGGGGTGGGTGGCCTCAAGAAGAGGCTAAAAACCTGGGGTTCTCAACAGGTCAACAATGAGACGGGGAGGGGTGCACCCAGGGAGGAGGCCAAAGTTCCAGCATCACAAATGGGGAGGAGGGAGGTTCCCAAAATCGCTTTGGGAGAGGGTAGGATGGAACTAAATGAGTGAATGAATTTGGGAGTGGAGTGTTTTAAAAGAGGAGGATATAGACTTGCTGACATCACCCTGCCCCCATACACCCAACCACACGCACAGCAGTCTCACACACACACACGCAACCATCTCCTGCAACTTACGGTGCTCAGTTCTGAGGCAAATAAATGAAGGGCTACTTTTTTTTTGGAATTGTACTTTATGAGATGTTAACGTGTAACCTGAAGAGGCAGTACTGGCTGACGGCACAGCTTGTGGGTGGGCAAGTTGTATTGGTGGGCACAGGAGTCTGTGGGCCATTGGGGAAGCCAAACCCTTTTTGAGCTTGACCTTAGGCTCCAGGATGGCCCTCCTAGAACCTCCCCACACCAAACCCCATGAAGGTCCAGGTGAATGGACAGAGGGACTAGTGCGGTGTCTCCTGCACACCTGGGACACTGGGCCAGCCATTCTGGGGTGAGAATGTTGTGGACGTATTTTCGTTGTCAAAGCATTCATCACTGAAAAGGTCTGGTGAGTGCTTATTTAGTTGTGTGGCGTGAGTGACTGAGCCCTTGTGAGAAGATTACTTATCTAAAAATGCTGGAGCATTTGAGAATCACTCTCCCGTAATCAGACGACCCTGAGTTTTCCCTGGGGATCAGGTATTTCTATGAAAAAGACCAGACACAGCTGGATGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGAGAGGATCACTTGAGGCTCAGAGATCAAGACCAGCCTGGGCAACGTAATGAGACCCCCATCCCTGTAAAAATAAAATAAAATAATTAGCTGGGTGTGGTGGCATGCACCTGTAGTCCCAGCTATTCAGGAGGCTGAGGGTGGAGGATTGCTTGAGCCCAGGAGGTTGAGGCTGCAGTCAGCCTTGATCATGCCATTGCATTCCACCCTGGGTGAGAGCCAGACCCTGTTACCAAAACAAACAAGCAAACAAACAAAAACCAAAAAAAAAAGAAAAAAAAACCCAGCACACTCACTAACATGGGTCCAGATGTTTTAGGTTTTATAAAAGGCCATGAAAAAATGTTCCTATTGTAAATGGTAGGAGCCTTCAGGTCACTGATGGGAGCAGGCAGTGGGGTAGGAGGCATGAGGTACTACTGACAAGTTTCCAAGGAGGTTCTCCTCCTTCTTATCCACCTGCTCCGTCTGGAGTCTCTTTTCCAGTTTCGTGACCAAGGGTGGATGCCGGAGAAGCTGTTTACCTCCCATGTGGGAATAGAAGATAAATGCTTTGCATTAAAAAGTGCACTGAAAGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCGAAACCCCGTCTCTACTAAAAATACAAAAAGTAGCCGGGCATAGTGGTGGGCGCCTGTAATCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGAGGCGAAGGTTGCAGTGAGCTGAGATGGCGCCATTGCACGCCGGCGTGGGTGACTAGAGCAAAAACTCCATCTCAAAAAAAAAAAAAAAAAAATGCACTGAAGGGAATTCCTCTCCATGATACTGCATGGGCGGATCCCTGTGATGATACATTTGTCCCACCCATAGAATGTAGACTTTAGTTACTAATAAAGTATCAACACTGGCTCCACCGTAAAAAGTGTGCTACACAAGTGCGACATGCTAAGGACAGGGGGAACTGTGTTTGCTGAGGGAGGTAATTTGGGAACTCTCCGTACTTTCTGTTCAATTTTTCTATAGATCTAAAACTTCTCAAAAACAAAGAAAAGTTTTCTCTTTGCACTTGTTTCTTGCCAAGGAGATGAAACATCAGGTGATGTGCGTGGCACAGGATCCTCTAAGGACAGGTCACCCGTATGGGGTAAAATATTTGGCGGAGGTCCAGACCACTCGCTTCAGGAATGTCACAGTCACCTAATGATGCTGTCTTGCTAGAATAACTCCTACCACTGGGTGCCCGCCCACACGAGTGGCCTCAGCACACCCCTTCTCAATGGAGTTTTGCTCTTGTTGCCCAGGCAGGACTGCAATGGCACAATCTCGGCTCACTGCAAGCTCCGCCTCCCCGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACATGCGCCCGCCACCACACCTGGCTAATATTTTTGTATTTTTAGTAGAGACGGCATTTCACTATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTGAGGCGATCCACCTGCCTCAGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCGCACCCAGCCCCAGTTAAGGTTGAAACCCACTGACATGGATATCATTTCTATTCCATAGAAGAGAAAACTGAAGTTCAGAGAGGGCTGGCAGCTTTCCCAGAGTAGCACAGTGAGCAAAAGCAGACCTGGGGGTGACTCCAGGACTGACCCCCAAGGCGATGCTCACAGCCACATCCTGAGGTAGAGATGGCACACAGGTGGCCCCACAGCTCATTCTTCTATCCTTAGAACAGTGCCGGGGGCAGTGTTAACAGCAAGTGCCAGGCATCGGGCATGGATTAGGATGGTCTGGGGTGAGCCAGGCCATCCTACCCACTCTGGCTTCTCTGCATTTTCTTATGAATTCTTATTTTTCTTTCAAAAATATTCAACGGATTGCTCAAGAGTATTATACGTCATTAATCCGTGTTCCTTTATCTCTTATAGAAAGTATTTTATCCAAATTCGAATAAATTTTCCCAACAACTTGCAG
Seq C2 exon
CGGGTGGAATGTTCCGGAACAATACTCTCAATGTTTACCTGGAGAAAAGCATCGTGACTGGCCCCGATAACTGCATCACCTCCTGTGACCGGCTCAACTTCCACCCCAGTTACAACATCAACAGGCCATCCATCTGCGATTGAGGGGCTGGAAACTCCCTCTAGGAGTCCTCTGACCCCAGGGCCTCCTGGAAAATCATCATCCCTCATCACCCACAGTCGCCCGATTGTGACGGCACAGACTGCGCTGCCTTCCCTGAAAATATTATTCGTCTGCGGAGTAGGAAAATATGCAAACGGGGCCGTGAAGTCCTGCCATTTCACATCTAATAAGTACATGGGAAAGATGCTAATGGTTGACTTTGCATTAAAAACGTTGTCACATCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160345:ENST00000371791:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF148921=DUF4490=FE(33.8=100)
A:
NA
C2:
PF148921=DUF4490=PD(29.9=50.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development