MmuINT0000854 @ mm10
Intron Retention
Gene
ENSMUSG00000026831 | 1700007K13Rik
Description
RIKEN cDNA 1700007K13 gene [Source:MGI Symbol;Acc:MGI:1916577]
Coordinates
chr2:28462001-28465215:-
Coord C1 exon
chr2:28465137-28465215
Coord A exon
chr2:28462435-28465136
Coord C2 exon
chr2:28462001-28462434
Length
2702 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
CTTGTTTGTTTGACTTTCAGAAA
3' ss Score
8.85
Exon sequences
Seq C1 exon
GACCAAGGAAGCTGTTTCCATGTACAGGACCAGTAACCAAACCTACGGAAGCAGAGCCCCCACGGTGCATGAGATGCCA
Seq A exon
GTAAGTGCAAGCCAGGCCTGCCAGGACGAGGGCCATCTGGAAAAGCAGACTTATGAGGAGTCAGAGTTGGGAATCAGCGTCCCACGTTGTAAATGCATGGCACCTCAAATCGAGTTAGGACAAGGCGGGGCAGAGAGATGATAGAATGCAATTTCAAAGCAGAATAGATTGTAGACAGGAAAGTCCAAGTAAACTTGCTTCCACGTTCTCCTCCCCATCAGACAGGCACGCACACCTTTGCCCGGGCACTCGAAGGCCAATTAGTGAAGTCAAGCGTTCATACGAGTGGCAGAACTCCTCGGAAGAGCCTGTCCACGGAAAGAGTCTGTGTTCCAAAATCAGACGCAAGGTGTTTCTGTGGGAAGCAGGAACATGGGAACTGCTGCCCATACCTTCTTAAATACATTCGCCTTGTCTCTGTGTGGGGGTACGCCATGCCACACGTGGTTGGAGGTCAGAGGGCCACGTGTAAGAGCTGGTTCTCCTTTCACCAGGCTTGGTAATAAGTGCCTTTGGTCTCAAGTTAGCCAGGGCTAGTTCTGAATCAGTTCAAAGCTTTGAACTGCCTGCACCTCGAAAGTGCTGGCTTAAAAGATGTGCAGTGCCAGGGCTTTGCAGACGTTAGACGTGGTGATCTGTCCACTGAGCCACACCCCTGGTTTCTGTTCTGCCTTTGTAAAAGGCCACGGAGAAGAAGCTGCTCTTTTCAACAGTGGTGCTTTCACCCAGGTTAGCAGGTCATGGGCCACAAGCCGCGGGTATCAGAGGCAAGCTAGGGGGTAGGTATTCCGTGCTTCTTAGTCCTGTTCTCTGGGGTTGACTTGTCAGCTTTCTGACTCAGTCCACTGCACCCTGTGAGCAACTCTTAGTATTATTCTGTCAGCTACGGCACTGGTGGATATTTATTATTATGGACTGTCAGAATGCATTGACTGTGCAGAGCCAAGAGCGGGCAGGCCCCAGTGCTCAGTGCACAGCTCAGGTATTGGCCATCAGCTCCACCTGCAATACACCATGCAGACAATAGGGGGAGCTGTGTGCATTGGAATGGTATTTGGACACTTTTTTTTTTTTTTTTTTTTTTTTTTCTCAGAGACAGGAGTTCTCTGTGTAAGTAACATCCTTGGCTGTCCTTGAACTCTTTTTGTAGACCAGGCTGGCCTCAAACTCACAGAGATCCGCCTGACTCTGCCTTCCAAGTGCTGGGGTTAAAGGCATGCTCTACCACACCCGGACTTGGACACTATATTTTATGTTCAGTTTCCCAGGAGATCTCAAATTTGCCTCTTGAAAAATGCCTGAAATAATTTCTCTTTGCTTTTCCTGCCAAAGAGAGAAAACATCAGGTGATCTTGGCCCAGGGTGGTCTGAGGACAGGTAGGACACTACTACCTGGTGGAGGTTGGTCTGCACACACCACATGTCCCCCTGTCATCACTGGAGTTCCCGGACTCACAGTGGCCACACTCAGCAAGAACTGAGTGCTGCCGGGAAGTGGTGGCACATGACTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTTCAGGACAGCCAGGACTACACAGAGAAATACTGTCTCGAAAAACAAAAACAAAAACAAAACCAACCAACTAAACAAACAAAGAACTGAGTGCTTCCGGCCTCAGCAGGGCAGCCCTTCCCATACACCGGGCTGGTGGTGCATAGTGCCCTTTTTAAAGCACCTGACAGAGGATTTTGGCTCATGGGATAGAAGCTCATTGCTAAGGCTTGGAGGAGTTGACCCTAAAAGGTCTGCATGTTAAAGGCAGGGTTACTAGTGTGTGCTATTGGGGTGTGGGACTTTATAGGAGTTTTCAGGGCTCTGGAGGTGTGTCCTCGAGAGGGATCCTGGGATCCAGCCAGTCCTCTCTCTGCTTTTCTTCATGGCCCATGATGTTTGCTCTTATCACAGTTACCCAGCAACCCCAGCCAAGGGCCAAAGCATTGAGGCTGTATTCATGAACTGGAGCTTCAGAAGTGAGGCCCACATGTGTTCTCTGTCTCTGACTCTCTCTCTCTCTCTTTCTGAGAAATGGTTTTTCTATGTAGACCAGGCTGGCCTCAGTCTCACAGAGACCTGCCTCTTGAGTGCTGGGATTAAAGGTCTGCCCCACCACACCCAACTATTTCTCTTCATAAGTTATAAGTATTTTGGAAGAGTATGGCAGACACTGCTGTAGAGTATTGTGACTACACTCACAGAGAAGGTTGAAGGGTACACAGGCCTAGTGTGGCATGGCTAGCAGGAGTAGACCTCAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTCTAACTCTGACCTAACTTCAGGTTAATGATTGCTGTCACACCTAGGCTAGGCATGGAGCTGCGGCATTCAGGTGATCCTGTAACTTCTCTTGCTGTCCATGTGGCGTGGGAAGGAGGCAGTGTTAATCATATTAGACATAAGCACACACTGGCATGGTTGGATGGCAAAGGGAGACCATCTTGCTCACCTTGGTTTCTGGGCTTCCTAGCACCAGAGGCTGTGTTTTCTCACAAATTCTCACTCTTCGTCCAAAGAACCAGTTGGTGGGACTGCCTGAGTGTTACTACCATGCACCACTAATCCTCTTGTTTGTTTGACTTTCAG
Seq C2 exon
AAAGTATTTTATCCATCTTCAAATAAGTTTTCCAGACAACACGCAGCTTTTGGAATGTTCCAGAGTCATAATATTAATGTCACCCTGGAGAAGAGCTTAGTGACCGGGCCTGACAATCACATCACCCACTATGACCGTTTGAACTTTCACCCCAGTTACAATGTCAACAGGCCGTCCATCTGTGACTAAGGGAGCTGGGTTCCTGTCCTCAGGGCTCTCCTGACTCAGGGCTGCTTCGGGGAGCACGGATGCCCTTGATCCTTGACAGGTGCCCTATTCTAAAGGCTTGGATCTCACTGCCTTCTCAGAAAACACTTTTCCTTTCCAGAGGAGAAAAATGTGCAAATAGAGCCACAATACCTTGTGTTCTGCATTTCACACAGGAAAGATGCTGACAGCATCTTTGTTTTATTAAAAAGTTGCCACAGCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026831:ENSMUST00000086370:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=0.306
Domain overlap (PFAM):
C1:
PF148921=DUF4490=FE(24.5=100)
A:
NA
C2:
PF148921=DUF4490=PD(30.2=50.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types