RnoINT0121554 @ rn6
Intron Retention
Gene
ENSRNOG00000010152 | RGD1306233
Description
similar to hypothetical protein MGC29761 [Source:RGD Symbol;Acc:1306233]
Coordinates
chr3:7047603-7051003:-
Coord C1 exon
chr3:7050925-7051003
Coord A exon
chr3:7048191-7050924
Coord C2 exon
chr3:7047603-7048190
Length
2734 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
3' ss Seq
TCTGTTTGTTTGACTTTCAGAAA
3' ss Score
9.33
Exon sequences
Seq C1 exon
TACCAATGAAGCTGTTTCCATGTACAGGACCAGTAACCAAACCTATGGGAGCAGAGCTCCCACAGCGCATGAGATGCCG
Seq A exon
GTAAGTGCAAGCCACATATGCCAGGACGAAGTACCATCGGAAGAGCGGATCCCCACGTTGTAAATGCATGGTACTTCAAATCGCAATCGAGTTAGAACAAGGCAGGGCAGAGAAATGATAGAATACAATTTCGAAGCAAAATATATTGTAGAAAGAGAAGTCCAGGTAAACTTGCTTCCACAGTCTCCTCCTCATCAGACAGGCATGCACTTCTTCACATGGGCACATACACCTTTGCAGGGGCTCCCAAAGGCAAATTAGTGAAGCCCAGTGTTCGTATGAGTGGCAGAACTCCTCTGAAGAGCATGTCCACTAAAAGATTTTCTGGACTCAGTGTTCTAAGACCAGATGCAAGGTGTTTCTGAGGGAAGCAGGAACATGGGTTCTGCTGTCCATACAGTCTTTTTTTTTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCACTTGCTAGGCAAGCGCCCTACCACTGAGCTAAATCCCCAACCCTGCCCATGCAGTCTTAAATCGCATTGGCCTTGTCTTGATGTGGGGGTGTACCATGGCACACAAGTATGGAGGTCAGAGGACCACTTGGAAGAGTTGGTTCTTGAGGTGGCTCTCCTCAGTAGTTAAGAGCACTGGCTGCTCTTCCAGAGGTACTGAGTTCAAATCCCAGCAACCACTTGGTGGCTTACAACCATCTGTAATGGGATCTGATGCCCCTTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTATTTATAATAAATAAAAAAATCTTAAGAAAAGGAAAGAAAATACACTGTACCTTAAAAAAATAAAGAAAAAGAAAAGAAAAGGAGTCGGTTCTCCTTTCACCAGGCTCAGCAATTAAGGACCTTTAGCTTTTTTCTTTGAGACATGGTCTCAAGATAGCCAGAGCTAGTTCTGAATCAGTTCAAAGCTTTGAACTCCTGAACCTCTGGCCTCCACCTCCCAAGTGCTGGTTTAGAGGTGTGCTCTCCCACATCCTGTTTCATGAAGTGCCAGGGCTTTGCAAATGTTAGACATCATGTTCTACCCAGTGAGCAACAGCCCCGGCTTCTGCTTCTGCCTTTGTAAAAGGCCACTGAGAAGAGGCCACTCTTTTTAACGCTAGGTGCTTTACAGCCAGGTTAGCAGGCCATGATGGGCCACAGGCTGCACGCAGGTATCTGAGGCAAGCTAGGAGGTAGGTATTCCCTGCTTCTTAGTCCTGTTCTTGGGGGTTGGCTTTTCAGCTTTCTGACTCAGTCTGACTGCACTCTGTGAGCAGCTCTTAGTATTAGTCTCTATGACACTACAATGGTGGATATTTATTATTATAGACCTGTCAGAATGCACTGATTGTCCCCCCAAGTGTTCAGTGCACAGCTCAGTAGCAGTATTGGCTCAGATAGATCAGGTCCGCCTGCAATACACCATGCAAACAATGGGGGGAGCTGTGTGTATTGGAATGGTATTCAAACACTCCCCCCCCCCCCCTTTTTCTGAGTCAGAGGTTCTCTTGTAACAGCCCTGACTGTCCTTGACTCTTTGTAGACCAGGTTGGCCTTGAACTCACAGAGATCCGCCTGGCTCTACCTCCCACGTGCTGTGGTTAAAGACGTGCTCCATCTCACCTGGCCTTGGACACTATATTTTATGTTCAGTTTTCTGGGAGGTCTCAAACGTGCTTCTTCAAAAATGCCTGAAATCATTTCTCTTTATTTGTACCTCCTGCCAAAGAGAGAAGGCAGGAGGTGAGCCTGACCCAGGGTGGTCCGAGGACAGGTCATCTGACCAGGACACCACTACCTGGTGGAGGTCAGTCTGCACACGTCAGACATCCCCCTGTCATCTCATGATTCCGTCTGGCTAGGCAGATTCTCACTGGAGCTCCTGGACTCAAATTATTCACACTTTCAGCAAGAACTGAGTGCTTCAGGCCACAGCAGGGCGCAACCCCTTCCATACACTGGGCTGGTGGTGCATCACGCCCTGGAGTCTTTTTAACTTTTTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTGGTTTTTAAAGACAGGGTTATTTTACTAGTGTGTGCTTTTGGGACGTAGGACATTATAGGAGTTTTCAGGGCTCTGGAGAGGGATCCTGGGATCCAGCCGGGCCTCTCTCTGCTCCTCTTCATGGTCCATGGTGTTTGCTCTCATCACAGTCACCCAGCGACCCCAGCCAAGGGCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAGTGTACTTTTATGTAATAAACAAACAAATCTTTAAAAAAAAAAGAGAGAGAGAGAGAGAGATTGCAAACACAGAGGAGAAGGTTGAAGCTTATGTAGGCCCTAGTGGCTTGGCTTGTGTGGCATGGCTAGCAGGGGTAGACTTTGGTGTGTGTGCGTATTTAGGGATATAACTGACCTACCCCCAGGTTAATGATGGTTGTCACACCTGTGGCAGGCAGATGATCCCGTAACTTCTCTCGTTGTCCATGTGGAAAGGGGAGGTGTTAAGTATATTAGATTAAACTGAGATGGTTGGAGCATCTGGCTCACCTTGTTTTCTGGGCTTCCTCTCACCAGAGGCTATAGTTTCTCACAGATTCATCCTCTTTGTCCAAAAAGAAGGTCAGTCTGCCTGCTTGAGTGTTACCACTAATCCTCTTGTCTGTTTGTTTGACTTTCAG
Seq C2 exon
AAAGCATATTATCCATCTTCAAATAAGTTTTCCACACAACACGCAGCTTTCGGAATGTTCCGGAGACATAATATGAATGTCTGCCTGGATAAGAGCCTAGTGACTGGGCCGGACAATCACGTCACCCACTACGACCCCTTAAACTTTCACCCCAGTTACAATGTCAACAGGCCATCCATCTGTGACTAAGGAAGCTGGCTGCCTGTCGTCGGGGCTGTCCTGACTCAGGGCTGCTGTAGGGAGCACGGATGCCCCTGATTCTGGACAAGTGCCCCATTCTAAAGGCACGGAGCTCACTGCCTTCTCAGAAAACACTTTTCCTTTCCAGAGGAGAAAATTATGTAAATAGGGCCATAATGTCTTGTGTTCTGCATTTCACACAGGAAGGATGCTGACAGAATCTTTGTTTTATTAAAAAGTTGCCACGGCTTCAATTTCTGTCGTGCTTCATATTTGTCCTGAAGTAGCAGGGGACCCGCACATCTTGGAACCCGAGTCTTGGTTTGCAATGTGGGGTGTTCTAGGGAGTGCCACAAAGCATCTTTATTTGGGAGCTGTTGCCATGTGTGTGACTGTTACTGGGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010152:ENSRNOT00000013473:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.741 A=NA C2=0.129
Domain overlap (PFAM):
C1:
PF148921=DUF4490=FE(24.3=100)
A:
NA
C2:
PF148921=DUF4490=PD(29.9=50.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]