HsaINT0025319 @ hg38
Intron Retention
Gene
ENSG00000160401 | CFAP157
Description
cilia and flagella associated protein 157 [Source:HGNC Symbol;Acc:HGNC:27843]
Coordinates
chr9:127706992-127709693:+
Coord C1 exon
chr9:127706992-127707192
Coord A exon
chr9:127707193-127709421
Coord C2 exon
chr9:127709422-127709693
Length
2229 bp
Sequences
Splice sites
5' ss Seq
CCGGTGCGT
5' ss Score
9.74
3' ss Seq
CGGCTCTGCCCCTGCCCCAGGTA
3' ss Score
6.84
Exon sequences
Seq C1 exon
GGCCTCTTCCTGGGGCCTGGAGCCCTGGTTGCCATCAGCCATGGCTCCCAAAAAGAGTGTGAGCAAGGCAGGCAAGGAGCTTGAAGTCAAGAAGAAAGGGGGCAAGAAGGAGCCGGTGGTGGCCGTGGAGCCGCCTCTGGCCAAGGAGATGAAGGAGTTCTACCACATCCAGATCCGAGACCTGGAGGACCGGCTAGCCCG
Seq A exon
GTGCGTGGGCTGGCGGGCAGGAGTCTGGTGCCCTGGGTCAGAAGCCCATGCCCAGGTGGCCCCCATGCAGGTTTGGCCATGGGGCCTTAGGCCTGTGTTCTGACCTCCCCTGGGATGTCCAGACCCCATCCCGACCCCAGCCTCATTTCCTCATACGTACCTTTGGGAGGTTTCAAGATTTTGAGGGTAAATGGATTTCCCCACCTTCCCAGCTCCTAGAACCCTGGGCCCACGATGCTAGCTCGTGGCCCCACCCCAGGCAATCCCCACGTCCCCCTGCCTCACTCCTGCCCCATGGGATCACAGGCTTTATGAAAGGGTGGAAACAGCCCTCTGGCAGGCGGGTGGACCCCCAGGCCCCACTTCCACTTCCTGGCAGTGGCACCTGTGCCCCACTGACTCACCCAGCACATGAGCCCAGTTGTTTCTCCATGCTGGGCCTCAGTTTCCCCAAATATAAGTGGGGAAGGTTGATTCCCCCTCCATGGCTGTGACATTCTATTCTAGAGCCAGTTTTGTGTGTGACATAGTGCTGGGGGGAGATCCTCTAACTCTTCATTCAGAGCCATGTTCACCTGCCCGTCATTTTCTTATGTTACAACCAGTTTCCTCCCCGTTGTGAGGCACCGCCCCAGTCTCAGGGTGACCTTAAAAGACAAACCAGTAGGCGGCAGCTCTTCCCCAGGTGACTGATGCTGTGGGTGACCACAGCTAATGCTGAGTCCCTCGTGGTGCCAGGCAGGCCATGGGCTGGTGCTCACTGAGTCCTCACAGCAGTCTTACTAGAGAGGTCCTGATGTCATCCCCATTGCACAGATGGGGAAGACTGAGGCTCAGAGAAGGGAAGTCACCCCCAGGAAGAGGAGGCACCAAGATGGGAGCCCTGGCCTCCTGACTCCCCTATGCAAGACTGCTTCCTCAGCCCCCACCCCTGAAATGCTCTGTGTGCAGTCACTATTTGAAAGATGTTGGTCAACTAAATTATGATGTAAAACAACTTTCCAGGCCAGGCACAGTGGCTCAGGACTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGCAGATCATGAGGTCAGGAGTTCGAGACCAGCCTGACCAACATGTTGAAGCCCAGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGCGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAGGCAGAGGTTGCAGAGAGCCGAGATCGTGCCACTGCACTCCAACCTGGGTGACAGATCGAGACTCCATTTCAAAAATTAATTAATTAATTTAATTTAATTAAAAAAAACTTTTCAAGTAACTTCAGTTACTCCATTGAAAACCACTAAATTGGTTATGTGATACTGATTAACACACTTCCCTTGAAATTCACAAACTTCCCTTGAGCTGAGATATCAGGTAGAATATATTCAAGGCAAATGTATTTAACAGAGTTATTGGGTGCTTACTATTTGCCAAGCCCTGGGAATACAGAGGTGGAGGAGAGGGACATGTTACTAGGTTTTGACCACTCAGTGGGACAAGGGCCAACTTACAGGAGCACCAAAGAGAGGGCCACAAATGTGGCTCAGGGCCAAGAAGGGTCCACTGAGGAGAAAACACCAAGGTTACTGGATGGAAAAAGGTAAGGGAGATGCCAGGTACAAAGACTTGGGATTGGAAAGTGTGGAAGAGTTATGGAGGGATGCAGAGCTGGCCGACTGCAGCAGGCATTGTGGCTAAGAGCCTTGCTTCTGGGGATCAGACTGATTCAGGTTCAAGTCCTGGCTGTGCCACTTACAAACTCAGAGTTCCTTTATCCTTCTGAGCCTCAGTTTCCTCATCTGTCAAATAGGTATAAAATCATCATAGTACCTACATTCTTATAGGTTGTTGTAATGATTTAACAAACACACTGCACACCTGCTATCTGCCAGGCACAGGTGTTGGGGACATACTTGTAAACATAACAAGGCCCTGCCCTCATGGAGTTTACATTCTAGTGATGTAATGAAAATAACATGCTAAGCACAGGCATTGGCTGTGGTCATGACTGTCGGACCAAGGGGCATAGTGGGAGATGAGGCTGGATTCTGATCACAAGGAAACTCAAATGCCCCTTTACGGGACAGGGAGTCCAGGAGAGTGGGCCCAGCTGCACCAGAGGCCTGGCTTGCCCAGCCTGACCCCTGGACCACGGCTCTGCCCCTGCCCCAG
Seq C2 exon
GTACCAGCGGAAGTGGGATGAGCTGGCTGTGCAGGAGAAGATGTTCCGCCAGGAGTTTGAGCAGCTGGCCAATAACAAGAAGGAGATTGTGGCCTTCCTCAAGCGCACGCTCAACCAGCAGGTGGATGAGATCACAGACCTCAACGAGCAGCTCCAGAACTTGCAGCTAGCCAAAGAGATGGAGAAGGATGCCTTCGAGGCGCAGCTGGCCCAGGTGCGCCACGAGTTCCAGGAGACCAAGGACCAGCTCACCACGGAGAACATCATCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160401:ENST00000373295:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development