MmuINT0001098 @ mm10
Intron Retention
Gene
ENSMUSG00000038987 | Cfap157
Description
cilia and flagella associated protein 157 [Source:MGI Symbol;Acc:MGI:2447809]
Coordinates
chr2:32781354-32784428:-
Coord C1 exon
chr2:32784221-32784428
Coord A exon
chr2:32781626-32784220
Coord C2 exon
chr2:32781354-32781625
Length
2595 bp
Sequences
Splice sites
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
3' ss Seq
TCTGCCCTGACCCACCCCAGGTA
3' ss Score
7.29
Exon sequences
Seq C1 exon
GGCTTCTTAAAGGGGACTTTAAAAAGTGGTTGCCATCAGCCATGGCTCCAAAAAAGAAGCCAAACAAAGGAGGCAAGGAGATGCAGGGCAAGAAGATAGGGGGCAAGAAGGATGCCAGTGGGACCAAGACTCCAGAGTTGGCCATGGTGGAGGAGCTGAAGGAATTCTACCACAAACAGATCCAAGACCTGGAGGACAGGCTGGCCCG
Seq A exon
GTGGGTGGCCAGCAGGGAAGCTAGTGCTACCAGGCCAAATGCACACAGGTTCAGATAAGGGCCTTAGACCTGGGCTCTGGCCAGGCCCTATCCTTCCCTGCTTCATTTACCTCAAGTAACCAGGTAACCCTGCGAGTGCTGAGAGGGTAAGGGGATTCCCAGAGCTCGGGGAGCACACTGCTAAATCCCAAGTAACACCCCACCCCCACTCTGGTCCACCCCCACAGGACGGCACTGTAAACATTAGAAAAGTGTAGTTTAATTGGTGGAAGAAATTGAAAATGGTTTTCCCTGGTGACCCAGGAGGACACCTCATTCCCTAGTCCCTTATGCCAAGACCCTGGTCTTGTTTCTCCAGGCTGGGTCTGTTTCCCTAAGTATTTGTTTTGTTTTAGAGACAGGATATTACTCTTTAGCCCAGGATAGCCTCAAACTCATGTTGATCTACCTGCCTCAGCCTCCCAAGTGCTGAAATTATAAGTGTGGACCATTATAGGTTCCCAAATGGGAACTAAGGAAGGGGATTTTCCTACTCGTGCCACTCCCTCTTGGGGCTAGGTTCCTTTGTGACAGATAGCAGGGAGGGGTCCTTCTTAGCATTTAGAGATACTATTTGCTTATTGTTTTCCCTACTTTAATACTAGCTTTAGGGCTGGGGAGAAGGCTCAGTGGCACTTGCCCCTCATCACCAGGACTCCCAAGGTAGAGGAATAGAACCAATTCCTGCAGGCTGTCCTCTGACCTCTGCTGCGCACACATACGCATGTACACACATAATCAATAAATCAGACACAACAAAAATGTCTGTAAGAATATAGTTTCTGCCAGGCGTGGTGGTGCATGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGGGGCCAGCCTAGTCTACAAAGTGAGTTCTAGGACAGCCAGGACTATACAGAGAAACCTTGTCTTGAACATCCCCTCCCCCAAAAGAATATATCATCTAACCTGGGCATGGTGGCACATGCCTACAGTCTCAGAAGGTTTGTTCTAAGTTCCAGAAGGAAAGGAACTTCGCCTGGACTATAGGGTAAGACCTCAAAAGAACAAGCCTCAAAAAAACAAGCAACACAAAGGTAACTTGCTGACAGGAAGCACCTGCCCCAGTCCCAAAGTGTAACACTTAAATAGGAAAGTAAGTGGGCAGGGAAATGGCCCAGTGACACCTGCCAGTCAAACGTGAGGACTAGAATTTGGATCCCCAACACTCATACAAATAAGTGTAGTGCCCACCTGCAGTCTCAGTGCATGGGATGTGGAAATAAAAGGTCCCCCTGGAGCAGTGTTTCTCAACCTGTGGGCCTTGACACCCCCAGACTACCAGAAAGTGCAGATACTCACAGTCTGTAGCAGTAGCAGGATTAGAGCTATGAAGTGGCAATGAAAGCAATGTTATGGTTGGGGATCACCATGGCAGGAGAAACTACGTATTAAAGAATACAGTGTTAGGAAGGTTAACAATCACTGCTCTAGAGCAGGCTAACTAGCTAGACTGGTGAACTCGGGAGCTCTGGGTTTAATTATATATGGGTTCAATGTATAAAGAAGAGAACCTCTATCTCCTTATCTATAAAATGGGTATAAGACAACAAGGCAGTGGAAGCTCATATGGTTGATGCTGAGAAAAATCACAGCTGGCGCTGAGCAGTTGTGTACCCAGGCAGGGCCGTGCGTCTCTGCTTAACACCATCCCACAAGAAAGGCACACACGGGGAACTGGGGAAATCACCCCAGGAAGAAGAGGCAGCAGGATGACAGTCCTGACCTTTGACACCTCTTATGGCAGACTGCCTCCTCTCCACACAAAGGCACCCATACCCTGAAACACCTTGTACGCACTACTCATTCAAAAGGTTTATCAAGAAATCCTTACAAATAAAGCAATTCTCCAAATGCTTCAGTAATCTTGTTTGAAACCAGTAAATAAGGCCCTCTTAAAATTTACAAACGATGCCTGGAGAAATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCTAGAGGTCCTTTTTTTTGTTGTTTTTTTGTTTGTTTGTTTTGTTTTTCGAGAAGGAGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTGGACCAGGCTGGCCTCGAACTCAGAGATCTGCCTACCTCTGCTTCCTGATTGCTGGGATCAAAGGCGTGTACCACCACGCCCAGCTTCTTCTAGAGGCCCTGAGTTCATGGTGGCTCACGACCATCTGTAATGGAATCCAGTGCCCTCTTCTGGTGTGTCTGCAGACAGCTACAGTGTGCTCACATACTCAGGTGTCCTTCACCCTGACCTTGATGGGGGTGGGGCTCTCTGCCGCTCACCAGCTACCCAGCCTAGCCAAACTGTTACACCTTAGATTTACTTACACACACACCTTTAAAACAGAAAGACAGTCTGAATGCTGAGCACAGGCCTCCAGGCGTGAAGCACAATGGGGGGTGCAGACTATGGGAAACTTCAGGTGGCCCCTTATGGAAGAAGGGTCTGGGAGAGCAGGCCCTGGCTTGACCCTGCGTCTCTGCCCTGACCCACCCCAG
Seq C2 exon
GTATCAGCGGAAATGGGATGAACTGGCTGTGCGGGAGAAGCTGTTCCATCAGGAGTTCGAGCAGCTGGCCAACAACAAGAAGGAGATTGTGGCCTTCCTCAAGCGCACGCTGAACCAGAAGGTGGATGAGATCACAGACCTTAATGACCAGCTGCAGAGCCTGGAGGTGGCCAAGGATATGGAGAAGGACGCGTTCGAGGCCCAACTGGCCCAGGTGCGCCATGAATTCCAGGAAATCAAGGACCAGCTCACCACAGAGAACATCGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038987:ENSMUST00000102813:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types