HsaINT0025651 @ hg38
Intron Retention
Gene
ENSG00000198870 | STKLD1
Description
serine/threonine kinase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr9:133376367-133379122:+
Coord C1 exon
chr9:133376367-133376560
Coord A exon
chr9:133376561-133379035
Coord C2 exon
chr9:133379036-133379122
Length
2475 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCG
5' ss Score
6.46
3' ss Seq
TCTCTCTTCCTTGCTGATAGGTT
3' ss Score
9.44
Exon sequences
Seq C1 exon
AGTGCCTCGAGGGCGCCGTTCGGGCGGGGAGGATCCCGCGGGTCCCACTGACCCACGCGGGGTGGGGCCAGGGGTGGACGCTCGCCCGTACGCGGTCGCTACTGATCATGCTTGGGCCAGGGTCCAATCGCAGGCGCCCCACGCAGGGGGAGCGAGGCCCAGGGTCCCCCGGAGAGCCCATGGAGAAGTACCAG
Seq A exon
GTGCCGAGTGTTCCCTGCGGGGAGGCGGGAGCTCCGTGGGGTAACGGTCGCAACCCTGGAGCTACGGCCGGCGGTTCCGACCGAGGGCGGCGAGGGGCCCGCGCCCTGGCCAGTGTCGGCCTGCAGCTCCTAGGTTGAACCCGGGGGGCCTCCAACGGTGACCTCCTGGGTGCCCTTTGCCACTCAGTTTCCCCCTTTGTGAATTGACTAAGGATTCTCCAGCCCTGGCTGAGTATTTGAGGGCGTGGGGCAGCTCCTCTATCCTTCGTGCCTGGGGTCTGTGCGCTTGGGTCCACCGAGGCAGGACCCCCGGGAACATCCCGAGTACATAATTGGGAGCCCCCAGTCCCCTAAAAACACCCCTGCAGCGTGGGTCTGTGAAAATGTTTGAGACCTAAAAAATTCACAAAACACAAAAGGAAAGCTGCAAAATAAAAGTAAATGTTTAATTAAATGCTTCTATACATGATATATACACTTTATTAAATGTTAGATTCAGCATTTGTGAAAAATGCATTCGCTTGGAAACAGTTTGCGGGTTAGATTTTTGTCACTTTGGAAGAATTGTCTTTGTGTGAGAGGACTATAGGGCGTTGCCAGAGGTGAAGCAGATGAGCTTCTGGTGGCCAGATAATTTTTAAAGTAAAGTTGTTTTTCAGATTAAAAAAAAATAGACGTTTCAGGAATATACCTGCTTTTGGAAAAAAAAATAGACTTGATTCGAGATACGGCTCCATTTTACTGTTTAATTTGCTGCCTAAGCTTGAACGCTCTCACACCAGCTCTGCCCTCAGCCCGCTGTGGCTTAGAACAGCAGTCCCTGGCCGGGCTCGGTGGCTCACGCCTGTAATCCCCAACACTTTGGGAGGCCAAGGCGGGCGGATCACCTGAGATCGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACTGTCTCTACTAAAAATACAAAATTAGCCAGGTGTGGTGGCGCATGCCTGTAATCACAGCTACTCGGGAGGCTGAGGCTGGAGAATCGCTTGAACCCAGGAGGCAGAGGTTGTGGTGAGCCAAGATAGCGCCATTGGACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTCAGAAAGAAAAAAAAAAATAGCAGTCCCCAACCTTTTTGGCACAAGGGACCAGTTTTGTGGAAGACAATTTTTCCACAGATGGAGGCGGGAGGATGGTTTTGGGATGATTCAAGCACATTACACTTAGTGTGCAGTTCATTTCTATTATTATGTTGTAATACATAATGAAATAATTACACAACTCACCATAATGTAGAATCAGTGGGAGCCCTGAGCTTGTTTTCTTGCAACTAGACCATCCTCTCGGGATGATGGGAGACAGTGACGGATCATCAGGCATTTGTTTCTCATAAGGAGCATGCAACCTGGATCCCTCACATGCACTGTTCACAATAGGGTTCACACTCCCATGAGAATCTAATGCTGCTGCTGAGCTGACAGGAGGTGGAGCTTGGGTGGTAATGCGAGCCATGGGGAGCGGCTGTAAATACAGATGAAGCTTTGCTCCACTGCCTGCTGCTCACCTCCTGCTGTGCAGCCTGGTTCCTAACAGGCCACGGACTAGGTTGGGGACCCCTGGCTTAGAATATCCAGTGTCATGAGCAGGCTGCTCACAAGGCTGGATTACAGACTCCTAAGACTTTTATGGGCTCCGAGAGTCCCTAGGCTCAGGCTTCCATCCTCATATCTCCTCCTCTGGGTCCTGCCCTCCCTCCCCCAATCCTCTGATGAATGTCAGCCTCCAGCAATCCCCGGCCCAGCCCCCTGCCCCATAGCACTTGGTCTCTGCACAGAGTTCTGGCTTGGTGGCCATCTCTCCAGATTTGGCTCAAATCACAGGCTCTAAGATCAGACCCCCAGAGTTACCCCAGGCAGTGTCCTGCTTTCTAGTGACATAGCCTCAGGCAAGGACCTAGCTCCTTGTGCCTCAGTTTTCCCCAATGTAAACACAGAGGTAGCAATGGTGTCAACTGCAAAGGGTGGCTGTGAAGTGCTTGGCACCATGCCAGGCACACAATGGCTTCCTGATTGTACCAGTCACAAGATTGGTTACTTTCTTGTTGGAAACCAGTTGGGAGGTGGATGCTGGAAGTTGAGGTCACAGAGGTCTATAGAGAGTGAATAAGCCCTTTTTCTCTGGGAGGTTCTTGCACTTGAGTGCCCAGCTGGTCCTCATTGCAGGTTGGGGGAGGGATACAGGGTTGTAGAAGAGCTCCAGAATCGGCCCCAAATAGGTGAGATCAGAGTTCTGCCATTGAAAGGCTTCTTGCCCTCCTTGGGCCATTTCCTCTATTGCAAGATGGGGTGGAGCCACTTGCTCTGCCAGCCTGACAGGGGAGTTAGCAGGGCCAGAAAAGGAGTTGGAGCTGGGCTTTTGGAAAGGGAAAAGTTGTGTGCATTTCCTGAAAGCTTCTCTCTTCCTTGCTGATAG
Seq C2 exon
GTTTTGTACCAGCTGAATCCTGGGGCCTTGGGGGTGAACCTGGTGGTGGAGGAAATGGAAACCAAAGTCAAGCATGTGATAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870:ENST00000371957:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.4=3.4)
A:
NA
C2:
PF0006920=Pkinase=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development