MmuINT1032362 @ mm10
Intron Retention
Gene
ENSMUSG00000049897 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26934069-26935400:+
Coord C1 exon
chr2:26934069-26934112
Coord A exon
chr2:26934113-26935291
Coord C2 exon
chr2:26935292-26935400
Length
1179 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
ATAATGTGACGTTCTCAAAGTCT
3' ss Score
2.46
Exon sequences
Seq C1 exon
ACAGTGAGGCAGTGTCTCCACGAGATACCATGGAAAAATATCAG
Seq A exon
GTGCTGAGATGCCCCCACAACCAAGGTCCAGTGTCCTTGGGCAGCGGGACAGGTCCGAGGGCCACACAGCCAGGCCCAGCCTCCATCACAGGGTGACCCTATGATCCCCGCATGTTTCCTCCTCCGAGTTCTCCTCCTTTGAGTCCTCCCAGGGCCTCAGTTTCCCTCTAAAATGATGACCAACCCCCAAGTCTGACCACTGGTTGGAGAATGGTGCACGTGCCCTTCCCCTTCCCTCCATGTATGGGGTCTTTAAAGGCAGAACCTGAGTGGTTGTTTTTTTAATCGCTTTTTTCCTCACATGTCAGCCTCATTAATTGTTAGACTCGGCTTATAAAAGCTTCAGTTTCGCTCATTTTCTTTTCCTCTTTTCCAGTATTCTTTGAGAGAAGGCTTACATGCGTTAGCCAAGCAAATGCACTTCTGATGGCCAGAAATGTTTAGAGAAAAACAAAAAACAAACCACTGCTCACTACCTGGGCTGAGCTCCAACGGACACCCTGTATTCCCTGTATGCTAATTATCCTTCCCGTACTGCCTACATATCTTGTCCCCTACCCCACGCTGACAGTGGCCTCTGTACTCAGGCCTCAGCCACCTTCTACCTGACAGCACTGATCTTGTAGAGTTCTGGCTTACAGACCAGTTCTGAAGGTGTGGCTTCAAAGATGAGCTCTGGCTCAGACCCCAGTCCCACAGCCACAGGCAAGGACCTTGCTCCTAGGCCCCAGTATCTATCTCTCAAGTGAATTGTAGGCAGCACCAGTGCAGGTTACAGAGGATGGCTGGGAAGCACTTCCTTCAGTACTGTGCCCTAGACGAAGCTATGACTGCACCAGTTACACAAATCACAGGCCTTGTTTGGATGTTCATTTTGGCGAAGGGTACTAGATGGGGTATCACTAGGGTTAAGAGCCACTTCTGCCCCCAGCCCCACCCCCCAACTGTCTCTTACCTATAAGGCTGCCCCTGTAGGCTTGGGGAAGGCCATAGGCTATAAAATAAGAGTTCCAGAATGGGCTTCGAGGGAAATTGTATTGGCCCCACCCTGGAAGGCTTCTCAATCCATCACCTAAGGCCATTTCCTCTACAACAAAATTGAGAGAAGAAGCCATACTTGGGGGTGGAGTGTGGAACCATCACATGTAGGAAGTAGAGAATAATGTGACGTTCTCAAAG
Seq C2 exon
TCTCTCTCTTCCTTGAGGATAGCTATTGCAAATGCTGAATCCTGGAGCCTTAGGGGTGAACCTGGTGGTGGAAGAACTGGAAACTGAAACCAAGTTCTTGATAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897:ENSMUST00000055406:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PU(0.9=20.0)
A:
NA
C2:
PF0006920=Pkinase=PU(9.4=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types