HsaINT0025661 @ hg38
Intron Retention
Gene
ENSG00000198870 | STKLD1
Description
serine/threonine kinase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr9:133383856-133385691:+
Coord C1 exon
chr9:133383856-133383900
Coord A exon
chr9:133383901-133385616
Coord C2 exon
chr9:133385617-133385691
Length
1716 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
CCTCTGCTCTATCCTGGCAGCTG
3' ss Score
10.03
Exon sequences
Seq C1 exon
GTGGAATGCATGGATGACCATTACGCCAGTCAGGCCCTGGAGGAG
Seq A exon
GTAACTCTCAGGGTAGTTTTCCCTCTGGAAGAGCTCAATGGAGCATACACAGACTGTGTTCTGTACCTTCTTGTTGAGTGCCTGGATGAAGAGAAGGCTGGAGGGAGGGATAGAGCATCAGCACCAGTTTTGCCTCAGCTGTGAAGCCAGCAGCCCCAGGTCATGAAGGGAGTCCATGCCCCAAACACTCACTGCTAAATGCAGGTGCCGACAACTTAGAACATATGTTCCCAGAGAACATAAAATTTAAATATTGGGCTGGGCACGGTGGCTCACATTTGTAATCCCACCACTTTGGGAGGCCGAGGCGGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTAGCCAACATGGGGAAACCCTGTCTCAACCAAAAATACAAAAAAATTAGCTGGGCATGGTGGTGGGCACCTGTAATCCCAGCTACTTCGAGAGGTTGAGGCGGGAGAATCACTTGAACCTGGGAGGCGGAGATTGCAATGAGCCGAGATTGCACCATTGCATTCCACCCTGGGTGACAGAGCAAAACTTTGTCTCAAAAATAAATAAATATTGGCCGGGTCCCTAGGTTAATCTACCAATAACTTCTTTAAATATTTTTTCTTCAATATAAAATTATTAATTACAGCAGAAAATTTTAAAAATACAGAATTGGGTTTTCTTTTGTTTTTACCTTTTTTTTTTTTTCTTTAATAGCAATGGGGTCTCACCATTTTGCCCAGGCTAGTCTGAATTTCTGGGCTCAAGCAATCGTCCCACCTCGGCCTCCAAAGTGCTGGGGTACAGGCATGTACCACCACACCCATACCAGAACTGTTTAACAAAACAAATATAAATTACCCTTAATTCTACCATTGAGAGCTGCCCAGCAGTAACATACTCGTTTACAATAATAGCGATAACAGCTGCACTTCGGTTTGATTGGCAAAGCCTCCGAGTAGCCTTTCTTTGTGTTTCTTGAATTTCCCACGAGCTTGAAGGTGTCCCCTCTTATCTCATGGTCACTTGTTTGTCTTCTGGAATTGCTGGCTCTGGAGCTTGGCCAGCAAACATTATTGGGTGTATAGTGTGACCGAAGCACAGTGGTGGGCCCAGGCTACTCGGTAACAAATGGGAAGAAAGAGCATGGGGCCTGCCCAGAGCCGCACGCCGCCGTGGCTTTTCACGTTGCCGATTCCCATCCACAGCCCACTAGGTAGGCCACCTGCTTTCATGCCCAACCTTCCACCCCAAGCAGTTGTCTGTCTGGCTCCATGTCTCTAAGGCAGCCCTATCTGCTCCTGTTTGGGCATGTTTCAAAGCACTTTCCGCCAGGGCAGGGGCACCGGGACCTCTCCGTGTGCCCACCTCCCGGTGTCTGCACCACCTCCTCCAGCCAGCCCTGGCTGTGGCTGATCCCCACCTTCCTGGCACTGCCTGCCACAGCTCACTCACCCCCCATGGTATCCCTGTGAGGCAGATTCCACTAGGACCCCCATTTTCAGATGACTATATGAGGCCCAGTCACCCAGCACAGCCAGCTCATGCTGGAGACAGGACCCACATCGGACTGCCTGGCTCCCAACCACCGTGCAGCTTCCCTGAGCCCACTCCCTGGCCCAGCTCAGAGCCCGAGGCTTGCATGTTTGTTGGGATGTGTGACAGAGAAGCCCGAGCTGAGAAAGGCGTGGAGAGGCACTGACTTCTCCGTTTCCTCTGCTCTATCCTGGCAG
Seq C2 exon
CTGATGCCACTGCTGAAGCTGCGGCACGCCCACATCTCTGTGTACCAGGAGCTGTTCATCACGTGGAATGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870:ENST00000371957:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.8=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development