HsaEX0011787 @ hg38
Exon Skipping
Gene
ENSG00000198870 | STKLD1
Description
serine/threonine kinase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr9:133383856-133395763:+
Coord C1 exon
chr9:133383856-133383900
Coord A exon
chr9:133387447-133387548
Coord C2 exon
chr9:133395600-133395763
Length
102 bp
Sequences
Splice sites
3' ss Seq
AGGGCCTCCTGTCCCAGCAGATC
3' ss Score
6.98
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTGGAATGCATGGATGACCATTACGCCAGTCAGGCCCTGGAGGAG
Seq A exon
ATCTCTTCTCTGTACCTCTGCCTGGTGATGGAGTTCAATGAGCTCAGCTTCCAGGAGGTCATTGAGGATAAGAGGAAGGCAAAGAAAATCATTGACTCTGAG
Seq C2 exon
GGCACAGAAGCCATGCATCTGCGGAAGTCCCTCCGCCAGAGCCCAGGCAGCCTGAAGGCCGTCCTGAAGACAATGGAGGAGAAGCAGATCCCGGATGTGGAAACCTTCAGGAATCTTCTGCCCTTGATGCTCCAGATCGACCCCTCGGATCGAATAACGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870_MULTIEX2-2/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.8=100)
A:
PF0006920=Pkinase=FE(12.2=100)
C2:
PF0006920=Pkinase=FE(20.0=100)
Main Skipping Isoform:
ENST00000371957fB27154
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGACCATTACGCCAGTCA
R:
TCGTTATTCGATCCGAGGGGT
Band lengths:
194-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development