GgaEX0004171 @ galGal3
Exon Skipping
Gene
ENSGALG00000003175 | C9orf96
Description
NA
Coordinates
chr17:7561534-7562870:+
Coord C1 exon
chr17:7561534-7561608
Coord A exon
chr17:7562264-7562368
Coord C2 exon
chr17:7562800-7562870
Length
105 bp
Sequences
Splice sites
3' ss Seq
GGTGTGATGTTTTATTACAGATA
3' ss Score
7.2
5' ss Seq
GTGGTAAAA
5' ss Score
2.98
Exon sequences
Seq C1 exon
GCAATGGGTTTGCTACAACTTCATCATTCAAGCATCTGTGCTTACAAGGAAATGTTTGTGACTTGGGATAATGAG
Seq A exon
ATATCATCTCTGTACCTTTGTCTGGTAATGCAGCACTCAGGCCAAGTGGATCTTTCATCTCTGATCAAGACAAAAAGGCAGAAGCCAGAGAAAATAGCAGACGTG
Seq C2 exon
GTGCTGCTGAAGTTTCTGGGACAGATGGTGGATGCTTTGTTTTATATACACAAGCAAAATATTTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.9=100)
A:
PF0006920=Pkinase=FE(12.5=100)
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTTTGCTACAACTTCATCA
R:
CTGTGGAAAATATTTTGCTTGTGTAT
Band lengths:
142-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]