GgaALTD0001177-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000003175 | C9orf96
Description
NA
Coordinates
chr17:7562297-7562870:+
Coord C1 exon
chr17:7562297-7562368
Coord A exon
chr17:7562369-7562375
Coord C2 exon
chr17:7562800-7562870
Length
7 bp
Sequences
Splice sites
5' ss Seq
AATGTACAG
5' ss Score
-2.23
3' ss Seq
ATGTATATACCTATCACCAGGTG
3' ss Score
7.52
Exon sequences
Seq C1 exon
CACTCAGGCCAAGTGGATCTTTCATCTCTGATCAAGACAAAAAGGCAGAAGCCAGAGAAAATAGCAGACGTG
Seq A exon
GTAAAAT
Seq C2 exon
GTGCTGCTGAAGTTTCTGGGACAGATGGTGGATGCTTTGTTTTATATACACAAGCAAAATATTTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175-4-5,5-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAGGCCAAGTGGATCTT
R:
TCCCAGAAACTTCAGCAGCAC
Band lengths:
93-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]