GgaINT0125415 @ galGal3
Intron Retention
Gene
ENSGALG00000003175 | C9orf96
Description
NA
Coordinates
chr17:7562264-7562870:+
Coord C1 exon
chr17:7562264-7562368
Coord A exon
chr17:7562369-7562799
Coord C2 exon
chr17:7562800-7562870
Length
431 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAAA
5' ss Score
2.98
3' ss Seq
ATGTATATACCTATCACCAGGTG
3' ss Score
7.52
Exon sequences
Seq C1 exon
ATATCATCTCTGTACCTTTGTCTGGTAATGCAGCACTCAGGCCAAGTGGATCTTTCATCTCTGATCAAGACAAAAAGGCAGAAGCCAGAGAAAATAGCAGACGTG
Seq A exon
GTAAAATGTACAGAAGAGGCATCTAGCTGAACTGACTGAATCTCACTGCATTTATATTTCTTCCTCTGTATTCTGTCTTTCTAGAAGTCATCCCTAAGACCTTCAGAGCACAGTGTTTTGCTGGAGGGTACTTTTGGAAGCTATCTTTGTCCTTAATTGCTGTGGCATTGCTGTAACACTAACTCTTTGTGTAGCTTGTTCTCAAGCAATTGCATCTTTCCCCATTTTACATTTTTATCCATGAAAAATATGGATAATTGTTATTACTGAACGCACACAGTGATGAGCATGTTTATCTATTTGGAGAAAATAGTACTTCCTTACTGGTGGGACCTTACTTCAAACAATGGTATTCTCTTTTGTTGAATATCTAATTTCTCTGTTATGTTATTCTGTGTATGTTATGCTTTCATGTATATACCTATCACCAG
Seq C2 exon
GTGCTGCTGAAGTTTCTGGGACAGATGGTGGATGCTTTGTTTTATATACACAAGCAAAATATTTTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175:ENSGALT00000005036:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.5=100)
A:
NA
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]