RnoEX6016044 @ rn6
Exon Skipping
Gene
ENSRNOG00000027911 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:RGD Symbol;Acc:1307355]
Coordinates
chr3:5487597-5490862:+
Coord C1 exon
chr3:5487597-5487671
Coord A exon
chr3:5488601-5488705
Coord C2 exon
chr3:5490792-5490862
Length
105 bp
Sequences
Splice sites
3' ss Seq
GGGGCCTTGTCTTCTGACAGATC
3' ss Score
8.16
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTGATGCCCCTGATGAAGCTCCAGCACTCCAACATCTCTGTGTACCATGAGATGTTCATCATGTGGGACAATGAG
Seq A exon
ATCTCCTCTCTGTTCCTCTGCCTGGTGATGGATTATTACAACCAAGTAACCCTCCAGAACATCATGGAGAATAAGAGGAAGATAAAAGAGGTTGTTGACACTGAG
Seq C2 exon
TGGATGCACACCATACTAAGCCAGGTGTTGGATGCCATCCAGTACCTACATGAGTTGAACATCGTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027911-'6-6,'6-4,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.9=100)
A:
PF0006920=Pkinase=FE(12.5=100)
C2:
PF0006920=Pkinase=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCCCCTGATGAAGCTC
R:
ACGATGTTCAACTCATGTAGGT
Band lengths:
140-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]