MmuEX6099794 @ mm9
Exon Skipping
Gene
ENSMUSG00000049897 | Gm711
Description
predicted gene 711 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26795491-26798672:+
Coord C1 exon
chr2:26795491-26795565
Coord A exon
chr2:26796531-26796635
Coord C2 exon
chr2:26798651-26798672
Length
105 bp
Sequences
Splice sites
3' ss Seq
GAGGCCTTGTGTTCTGGCAGATC
3' ss Score
7.21
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTGATGCCCCTGCTGAAGCTCCAACACCCCAATCTCTCTCTGTACCATGAGATGTTCATCATGTGGAACAATGAG
Seq A exon
ATCTCCTCTCTGTTCCTCTGCCTGGTGATGGATTATTACTCCCAAGGAACATTCCAGAATATCATGGAGAATAAGAGGAAGTTAAAAGCAGTTGTTGACACTGAG
Seq C2 exon
TGGATGCATACCATGCTAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(21.2=100)
A:
PF0006920=Pkinase=FE(12.8=100)
C2:
PF0006920=Pkinase=PD(5.3=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: