MmuEX6099794 @ mm10
Exon Skipping
Gene
ENSMUSG00000049897 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26939971-26943152:+
Coord C1 exon
chr2:26939971-26940045
Coord A exon
chr2:26941011-26941115
Coord C2 exon
chr2:26943131-26943152
Length
105 bp
Sequences
Splice sites
3' ss Seq
GAGGCCTTGTGTTCTGGCAGATC
3' ss Score
7.21
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTGATGCCCCTGCTGAAGCTCCAACACCCCAATCTCTCTCTGTACCATGAGATGTTCATCATGTGGAACAATGAG
Seq A exon
ATCTCCTCTCTGTTCCTCTGCCTGGTGATGGATTATTACTCCCAAGGAACATTCCAGAATATCATGGAGAATAAGAGGAAGTTAAAAGCAGTTGTTGACACTGAG
Seq C2 exon
TGGATGCATACCATGCTAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-'3-10,'3-5,7-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(21.2=100)
A:
PF0006920=Pkinase=FE(12.8=100)
C2:
PF0006920=Pkinase=PD(5.3=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types