HsaEX0011789 @ hg38
Exon Skipping
Gene
ENSG00000198870 | STKLD1
Description
serine/threonine kinase like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr9:133389526-133394409:+
Coord C1 exon
chr9:133389526-133389596
Coord A exon
chr9:133390681-133390796
Coord C2 exon
chr9:133394291-133394409
Length
116 bp
Sequences
Splice sites
3' ss Seq
AACCCACCTCTTGGTTTCAGGAA
3' ss Score
8.09
5' ss Seq
AAGGTGGCA
5' ss Score
1.02
Exon sequences
Seq C1 exon
TGGATGCAGAATGTGCTGGGCCAGGTGCTGGACGCGCTGGAATACCTGCACCATTTGGACATCATCCACAG
Seq A exon
GAATCTCAAACCCTCCAACATCATCCTCATCAGCAGTGACCACTGCAAACTGCAGGACCTGAGTTCCAATGTGCTAATGACAGACAAAGCCAAATGGAATATTCGTGCGGAGGAAG
Seq C2 exon
ACCCCTTTCGTAAGTCCTGGATGGCCCCTGAAGCCCTCAACTTCTCCTTCAGCCAGAAATCAGACATCTGGTCCCTGGGCTGCATCATTCTGGACATGACCAGCTGCTCCTTCATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198870_MULTIEX2-5/7=4-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(10.6=100)
A:
PF0006920=Pkinase=FE(14.4=100)
C2:
PF0006920=Pkinase=FE(14.4=100)
Main Skipping Isoform:
ENST00000371957fB27155
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAATGTGCTGGGCCAGG
R:
GAAGGAGCAGCTGGTCATGTC
Band lengths:
178-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development