MmuEX6099792 @ mm9
Exon Skipping
Gene
ENSMUSG00000049897 | Gm711
Description
predicted gene 711 [Source:MGI Symbol;Acc:MGI:2685557]
Coordinates
chr2:26798651-26801080:+
Coord C1 exon
chr2:26798651-26798721
Coord A exon
chr2:26799397-26799512
Coord C2 exon
chr2:26800962-26801080
Length
116 bp
Sequences
Splice sites
3' ss Seq
GGCCCTGTTCTTTGTTGCAGGAA
3' ss Score
10.87
5' ss Seq
AAGGTGTCT
5' ss Score
2.57
Exon sequences
Seq C1 exon
TGGATGCATACCATGCTAAGCCAGGTATTGGATGCCATCGAGTACCTACATAAGTTGAACATCGTTCACAG
Seq A exon
GAACCTCAAGCCTTCCAACATCGTCCTTGTTAACAGTGGCTACTGTAAACTGCAGGATATGAGCTCCCAGGCACTGATGACCCACGAAGCTAAGTGGAATGTCCGAGCAGAAGAAG
Seq C2 exon
ACCCCTGCCAGAAGTCCTGGATGGCTCCTGAAGCTCTCAAATTCTCCTTCTCCACCAAATCCGACATCTGGTCTCTGGGCTGCATCATTCTAGACATGGCCACTTGCTCCTTCCTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049897-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(5.3=75.0)
A:
PF0006920=Pkinase=FE(14.7=100)
C2:
PF0006920=Pkinase=FE(14.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGCTAAGCCAGGTATTG
R:
GTTCAGGAAGGAGCAAGTGGC
Band lengths:
181-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: