RnoEX0087050 @ rn6
Exon Skipping
Gene
ENSRNOG00000027911 | Stkld1
Description
serine/threonine kinase-like domain containing 1 [Source:RGD Symbol;Acc:1307355]
Coordinates
chr3:5488601-5493305:+
Coord C1 exon
chr3:5488601-5488705
Coord A exon
chr3:5491548-5491663
Coord C2 exon
chr3:5493187-5493305
Length
116 bp
Sequences
Splice sites
3' ss Seq
GGCCCTGTTCTTGGTTTCAGGAA
3' ss Score
9.9
5' ss Seq
AAGGTGGCA
5' ss Score
1.02
Exon sequences
Seq C1 exon
ATCTCCTCTCTGTTCCTCTGCCTGGTGATGGATTATTACAACCAAGTAACCCTCCAGAACATCATGGAGAATAAGAGGAAGATAAAAGAGGTTGTTGACACTGAG
Seq A exon
GAACCTCAAGCCTTCCAACATCATCGTCATTAACAACAGCTACTGTAAACTGCAAGACTTGAGCTCCCAGGCACTGATGACCCATGAAGCCAAGTGGAATGTCCGAGCAGAAGAAG
Seq C2 exon
ACCCCTGCCAGAAGTCCTGGATGGCTCCTGAAACTCTCAAATTCTCCTTCTCCATCAAATCCGACATCTGGTCCCTGGGCTGCATCATTTTAGACATGGCCACGTGCTCCTTCCTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027911_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(12.5=100)
A:
PF0006920=Pkinase=FE(14.4=100)
C2:
PF0006920=Pkinase=FE(14.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTCTGTTCCTCTGCCTG
R:
ATTCAGGAAGGAGCACGTGG
Band lengths:
221-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]