GgaEX7009805 @ galGal4
Exon Skipping
Gene
ENSGALG00000003175 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr17:6892755-6893742:+
Coord C1 exon
chr17:6892755-6892828
Coord A exon
chr17:6893022-6893137
Coord C2 exon
chr17:6893627-6893742
Length
116 bp
Sequences
Splice sites
3' ss Seq
GGAAAATATTTGCATTGCAGAAA
3' ss Score
4.32
5' ss Seq
AAAGTAGAT
5' ss Score
0.25
Exon sequences
Seq C1 exon
AAGGTGCTGCTGAAGTTTCTGGGACAGATGGTGGATGCTTTGTTTTATATACACAAGCAAAATATTTTCCACAG
Seq A exon
AAATCTCAAGCCATCAAACATACTTGTGACTGGTGAAACATCCTTCAAGCTTTGTGACTTTGGTACAGAAACACTTATGACCGACGAATGGAAATGGAAAATAAGAGTGGAAGAAA
Seq C2 exon
CAGATTGCAAGTGTTGGATGGCTCCAGAAGCATTCAGTTTTTCTTTCAGTGATAAGTCAGACATCTGGTCTCTAGGGTGTATCCTACTTGACATGATGACCTGTTTTGTTTTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003175-'8-10,'8-8,9-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.8=100)
A:
PF0006920=Pkinase=FE(14.3=100)
C2:
PF0006920=Pkinase=FE(13.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCTGCTGAAGTTTCTGG
R:
TCAAAACAAAACAGGTCATCATGTCA
Band lengths:
187-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]