BtaEX6047297 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004140 | STKLD1
Description
serine/threonine kinase-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:28669]
Coordinates
chr11:104348652-104351042:+
Coord C1 exon
chr11:104348652-104348722
Coord A exon
chr11:104349342-104349457
Coord C2 exon
chr11:104350924-104351042
Length
116 bp
Sequences
Splice sites
3' ss Seq
GGCGTGCCTCTCGGTTGCAGGAA
3' ss Score
9.12
5' ss Seq
AAGGTGGCT
5' ss Score
2.88
Exon sequences
Seq C1 exon
TGGCTGCAGAACATGCTAGGCCAGGTGCTGGACGCGCTGGATTACCTGCACCACTTGGACGTCATCCACAG
Seq A exon
GAACCTCAAGCCCTCCAACATCGCCCTCGTCAGCAACGCCCACTGCAAACTGCAGGACCTGAGCTCCAACACGCTCATGACCGACAAGGCCAAGTGGAACGTCCGGGCAGAGGAAG
Seq C2 exon
ACCCCCTCCAGAAGTCCTGGATGGCGCCCGAAGCCCTCAGTTTCTCCTTCAGCCAGAAATCTGACATCTGGTCCCTGGGGTGCATCGTCTTGGACATGGCCAGCTGCTCCTTCCTGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004140-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(8.6=100)
A:
PF0006920=Pkinase=FE(14.5=100)
C2:
PF0006920=Pkinase=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACATGCTAGGCCAGGTG
R:
GAAGGAGCAGCTGGCCATG
Band lengths:
178-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]