HsaINT0026510 @ hg19
Intron Retention
Gene
ENSG00000151062 | CACNA2D4
Description
calcium channel, voltage-dependent, alpha 2/delta subunit 4 [Source:HGNC Symbol;Acc:20202]
Coordinates
chr12:1987481-1988202:-
Coord C1 exon
chr12:1988122-1988202
Coord A exon
chr12:1987556-1988121
Coord C2 exon
chr12:1987481-1987555
Length
566 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCCACCCTGGACTCTGGCAGCTT
3' ss Score
3.54
Exon sequences
Seq C1 exon
CGATCCCATGGCATTCTCCTGGGTGTGGTGGGCTCAGATGTGGCCCTGAGAGAGCTGATGAAGCTGGCGCCCCGGTACAAG
Seq A exon
GTGAGCCTGGGTCTGTTCCCTGTGGGGATCACAGGTTCCCCAGGAGCAAACTCCCTCCCCCGTGATGGGAGCCTCTCTCCAGGCAAGCCAAGCCCAGAGCTGGGGTGGGGCCCCTCCATCACTGCCCAAGAAGTGCAGGTGCTGAGCAGGGGAGCAGCAACTGGTGCCCCTGGGTCCCTTTCCCACCACGAACTATGACTTGCTCTGTGGCCTTCAGTAAGTCCTTTCCCTGCCCAGTGTCTCAGTTTCTCAGTCTGCTCCTCCGTGCCACACAGTCCTGCTGTAAGGGTGAGTGAGATTACATCATCAAAGCACCCAGAACATGTGGTGGTAAAGAAGTCAGGTAATAATATGTATGATGACGGTTGCTATAAACAGTCCGGTTTGGAAAGGACTCCTCAATCAATGATGGAAGCATGGCACTGGCTCAGTTACGTTCCTATTGAAAACACTCACTGCTGTGAGCTGCCATCTTTGACCGTCCTGTGGCCCCCAAACCCCTGCCCAACTCCAGATGCCCAGCACAAACAGCAGGCCTAATGCGCCTCCACCCTGGACTCTGGCAG
Seq C2 exon
CTTGGAGTGCACGGATACGCCTTTCTGAACACCAACAATGGCTACATCCTCTCCCATCCCGACCTCCGGCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151062-CACNA2D4:NM_172364:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.093
Domain overlap (PFAM):
C1:
PF0274313=Cache_1=FE(27.7=100)
A:
NA
C2:
PF0274313=Cache_1=FE(25.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)