HsaINT0026593 @ hg38
Intron Retention
Gene
ENSG00000182389 | CACNB4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:151880800-151883370:-
Coord C1 exon
chr2:151883251-151883370
Coord A exon
chr2:151880923-151883250
Coord C2 exon
chr2:151880800-151880922
Length
2328 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTCCATGGTTCTGTCCCTAGTCC
3' ss Score
9.46
Exon sequences
Seq C1 exon
GGTTCAGCGGATTCCTACACAAGCAGGCCGTCTGACTCCGATGTCTCTTTGGAAGAGGACCGGGAAGCAATTCGACAGGAGAGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCAAAG
Seq A exon
GTGAGTCTCTTTCCTTCTCTTTGGCTCAAAAGTGGGTCGTTGCTCAGTGGCTACCAGCTGCTCTTCCCTTACCTCACATTTCTGGAATAATCATTTTGTGATTATTCTAACAAGGCTCCAGATTGGGAAGCTCTCTGATCCTTTCACCTCTAAGTGAGGTTAGTAACATCTCCAAAGAGGCATTTCCTCAGAACCTTCACCTTTTTGTATTTGGTTTGGTGGTGAATTATTGGTCGTCTTCCAACTTAGCAATATCAAACCTCCCATGCCCAGTGTTGGCAGACAGCCCCCCAGGCACCAGCTGGCCCTGCCTATTCCTGGCCCCTCCTCATCCATTACTTCAGCCTTTATTACAGGCCACACGTGTGCTGTTGTTCTGTGGATCGCCCTGTTTGTTTCTCTACTCTTCTCTCTCGCTTTCAGTATCCCACCTCAAGTTCAGTGTGAAGTTCAGGACTTTGAACAACTCTGAGAAGTGCAGCAAAGACAAGCAATAAAGGCCATTGCCAAAATAGACCTTCAGATATTCCACAAGAAGAGGCCTCCATAGAAATCGCTGCATCCACAGGAAGCAGCAAGGAGCCAACTGCATGGTTGAAAGTTAGAACCAGAAGAGTCACTAGGGATCTCCCATTCCATGTGCTTCCAACTTTGTTTTGTTTGTTTGTTTGCTTTTTGATTTTTTGAAGCACGACCCTTTTTGTCCAATGAAATTTTATGCACAATAGCAAAATACAAGACAAGGTCATGGCCGGCCTGTCCTCTTTGCCCTACGTGACAGACTCCTAAGGTATATTGGTTCAGTCTTCTGATTTTTAGAAGAAGAAAAAACAGAAGCCCAAATAAAGTGAATTCCTTCCCTTTTCTATTTTTATTGTAAAATATTTAGAGGTGAGAGGCTGTGCATGGTGGCTCACATCTGTAATTCCAGCTACTTGGGAAGCTAAGGTAGGAGGATCACCTAGGCCCAGGAAATAAAGGCTGCAGTGAACTGAGATCACACCAGTGCACTCCAGCCTGGGCAACAGAGCAAAACCCTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGGGCCGGTGCAGTGGCTTACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCATGAGGTCAGGAGTTAGAGACCAGCCTGGCCAACATGGTGAAACCCCACCTCTACTAAATATACAAAAAATAGCTGGGCGTGGTGGTGTGCACCTGTAATCCCAGCTACTCGGGAGGCAGAGGCAAGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTCAGCCGAGATCACACCATTGCATTCCAGCCTGGGCAACAGGGTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGATGGGAGGAGAATGATGCAGTCAAATTAGGTGTCTTCATTTGCCTCAACACCTATGATGTCTGTACTCTGTTGGTGGAAGGGGCTTTTCTTGCAGTACATGTGAAGGGACATCAGTGAGGTTTCAGCCTTAACTGCTGTTCCCCAGTCAGATTCCCAGCACAAATACATAAGCTGGTAACAAAGCAGCTCAGAATATCAGGAATCTTGTGTCTCACTGTGGCTAATTTTTGTTACAAAATTTTCTTTCAGAATCTGTTTTGTGACCAGTGTGGTCACCCGAATTTGGGTGGCAGCACCGTTTGCTTAGGCTGGTGGTTTACGTGTCCCCACAGTGCTGTGCCAGCCTGAGAGCACTTTGCTGAGAGGCATTTGTGTAAAAAGAGTTTCAAAACCAGCTTCGTTAGCTAGAGAGAAGGTGATCTGTGAAGAGCCCTGCCCATCAGCTTTGACGCTGACTAACCCTTCTTTTCCCCGGCAGGACCAGATATTCTGTTGTATAGAATCCCACACGTTTTCAGATCTGGACTATTTAAAAAATACTATTTTATCCTCTTCCCACCTTTTTTTTTTTCTTTTTAAAAAGACCTTGCACACATTTCCTGTATTCCAAGTTAAGAAGCTATTGGTTATCATTTAAAATAAACACAGATTTTAAGATTAGAGAAGAGACTGTCCTCCCCTGCCTTTGTCTATCCCTCTTAATACTTTAGAGCACATTTTAAAATTTGGAATATTGGAAAGTATTGCAGGAAAGGAAAAATGGTTGGGCTGATAGGACCAATCATTTTCAGAGTCATCTCTGCAGGTTTCTTGATATTGCTTGAGAATGTAAAACTCATTTGAGATCCCTCTTTGGAAAGTTATTTCTCACTACCTGGTACTATCAGAGTTTCAATATGAAAAATGCTCCTCTCTCCTCCCTTCCTCATTCCTTATTCCATGGTTCTGTCCCTAG
Seq C2 exon
TCCAAACCTGTAGCATTTGCCGTGAAGACAAATGTGAGCTACTGCGGCGCCCTGGACGAGGATGTGCCTGTTCCAAGCACAGCTATCTCCTTTGATGCTAAAGACTTTCTACATATTAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182389:ENST00000539935:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.838 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
A:
NA
C2:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(44.2=46.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000201943, ENSP00000353425, ENSP00000380490, ENSP00000390161, ENSP00000443893, ENSP00000489677, ENSP00000489697, ENSP00000489732, ENSP00000489746, ENSP00000489772, ENSP00000489788, ENSP00000489818, ENSP00000489876, ENSP00000489881, ENSP00000489883, ENSP00000489912, ENSP00000489943, ENSP00000489967, ENSP00000490124, ENSP00000490127, ENSP00000490138, ENSP00000490144, ENSP00000490145, ENSP00000490176, ENSP00000490247, ENSP00000490249, ENSP00000490250, ENSP00000490252, ENSP00000490276, ENSP00000490337, ENSP00000490430, ENSP00000490443, ENSP00000490488, ENSP00000490501, ENSP00000490510, ENSP00000490572, ENSP00000490607, ENSP00000490651, ENSP00000490660, ENSP00000490787, ENSP00000490795, ENSP00000490891, ENSP00000490910, ENSP00000490918
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development