BtaINT0030567 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44401017-44403568:+
Coord C1 exon
chr2:44401017-44401136
Coord A exon
chr2:44401137-44403445
Coord C2 exon
chr2:44403446-44403568
Length
2309 bp
Sequences
Splice sites
5' ss Seq
AAGGTGACG
5' ss Score
7
3' ss Seq
TTCTATGGTTCTGTTCCTAGTCT
3' ss Score
8.01
Exon sequences
Seq C1 exon
GGTTCAGCGGACTCCTACACAAGCAGGCCGTCTGACTCCGATGTCTCTTTGGAAGAGGATCGGGAAGCGATTCGGCAGGAGAGGGAGCAGCAGGCGGCCATCCAGCTTGAGAGAGCAAAG
Seq A exon
GTGACGTTCTTGCCCCTCTTGGGTTCCAAAGTGGCATGTTGCTCAGCAGGTATCAGCTGCTCTTCCCCTGCCTCACATTTCTCTGGAATAATCGCTTTATGATTGTCCCGATAAGGCACCAGATTGCCAGGCCCTCGTCTGTTCACCCCTGATAGTAACACTCTCAGGGAGTGAGTGGTATCCTGAGACCTGGACCCTTTCAGTTTCCTTTTGCATTTGGTTGGGTGGTGAAAACTCTTGGTCATCTTCGATCTTGGTGATTGTGGACCATACCCAGCTTGCCCTTCCGGGAGTTGGCAGAGAGCCTCTCAAGGGACCAGCTTGCCCGCCCCGTTCTCCATGACAGTAGCCTTCATCACTGGCCGCAGGCGCACAGCTGGTCTCTGCACTGTTGATGTCTCTATCCTTCCCCCCTGGTTTCAGTCTCCCACCTCAAGTTCCTTCCCTGTTCAGAACTTTGAGCAACGATTAGCATTTCAGCAAAATCGAGCAATAAAAGGCTTTGCTTTTATTGAATTATTGATTATTGAATGATTGTTGAATAAGCTTTCAGATTATTGAATATCTGAAAGAGACCTTCAGATATTCCAGAGGAAGAAGACCCCATCAGTTCAGTTCATTCAGTCGCTCAGTCATGTCCGACTCTTTGCGACCCCATGAATTGCAGCACGTCAGGCCTCCCTATAGGAGGCAACAAAGAACAAATTGCATTTTTGAATGCTAGAACTGAATGAGTCACTAGAGATCTCCCGTGCTATGTCTTTCAGACATTTTTTTTTAAGCACAGACCCTTTTTTTGAAATGAAATTTTATTCACAGTAATGGACATAACAGATTGCTAGTCAGCCTCTCCTCTTTGCCCTTCATGATAGACTCCTAAGGCATATTGATCCAGTCTTTCCAAGTTTTAGGAGGAAAAAAAAAAAGGAAGCTCAAATAAAGTGAACTCCTTCCCTTTTCTATTTTGACAGTAAAATATTTAAAAGAGTGGGAAGAGGAGTGTGAGGCAGGCTCAGGAAGTGTCTTCCTTTGCTTTGACACCTGTGATATCTGTGCCAGGTGGTGGAAGCGGGTTGGAGGCAGTGCGGTGTCAGCGGGACCCAAATTCAGGTCCTGCTTCGACCCTCTTGCTCCCCAGGTGTGTTCCCAGCTTGAAGAAATGAGCCCATAGCAGAGCAGCCTGCCAGTGGTACAGAATTCGCCTGCCAGTGCAGGAGACCCAAGCCCGGTCTCTGGAGCTGGGAACTGCAATCCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGTGGGCTGCAGTCCATGGGTTCACGACACGACTGAGAGACTAAGCACCTCTAGAATAGAGCAGCCCAGGATTGCAGGAACCTGGTGTGTTCTCGCGTGGCTAATTCCTGTTTTAGTCTTCTCTCAGGGTCTATCCTGTGGCTGCTGTGGTCACCCGGATGTCAGCAGCAGTGCTGTCAGCTGAAGCTGGAGGTTGGCTGAGCCTCTGCCAAGCTGCAGCCGCCCAGGAGCACTTTGCTGCAGGGGAATTTGTCTAAAAAGAGTTTCAGAAGCAGTTTTGTTAGCTAGGGAGAAGGTGACGTGATGAGTAAACGGCTCCGCCCTCCCTGTCTGCCCCGGCCGGGCTGGCCTTTTTTTTCCCTGCGGGGACAAGATATTCTGTTGAGTGGGATCCTGCAGGTTTTCAGATCTGAGGCTATTTCAACAATATTTATTTTACCCCTCCACCTCTTTTTCCTTAAAGACCCAGCATACATTTCCTGTACCCCAAGATGTGGGTATCTGTTATCATTTAAAATAATAAACATGGGAATTCCTTGGTGGTTCAGGAGTCAGGACTCCATCCTCTCACTGCTGAGGGCCCAGGTTCAATCCCTGGTTGGGGAGCTGGGATCCCTCAGGCCTCATGGTGCAGCCAAAGAGAGGTAAAAAGAGTAAAAGGACGCTCATACTTCAGAAAATAAAATAACCAACTCAAGTTTTATGACTAAAGGACAAAGCAGACTGCCCCTTCTGCCTTCCCTCCCCAAGACTCTGGGGCACAATTCTTTGGAATGTTGGAAAGTATGACAGGAGGGGAACAGGGTTGAGTGAGTAGGACAGAATCCTTTTCAGAGTCCTTTCTGCAGATTTCTTAGTGCTGCCTGGAAATGCGAAACCCAATTGAGATCCCTCTTTGGAAAGCGATTTCTCTTACTGCCTGGTACTCTCCGTGATCTGATTCTACATTTCAGTTAGAAAAACCCTCCTCGTCTTCCTCCCTTCATCCTTCTTCTATGGTTCTGTTCCTAG
Seq C2 exon
TCTAAACCCGTAGCATTTGCTGTGAAGACGAATGTGAGCTACTGTGGTGCCTTGGACGAGGATGTGCCTGTTCCAAGCACGGCCATCTCCTTTGACGCGAAGGATTTTCTACACATAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297:ENSBTAT00000002971:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
A:
NA
C2:
PF120523=VGCC_beta4Aa_N=PD(2.4=2.4),PF0001823=SH3_1=PU(44.2=46.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]