HsaINT0027325 @ hg38
Intron Retention
Gene
ENSG00000014216 | CAPN1
Description
calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr11:65209323-65209917:+
Coord C1 exon
chr11:65209323-65209387
Coord A exon
chr11:65209388-65209848
Coord C2 exon
chr11:65209849-65209917
Length
461 bp
Sequences
Splice sites
5' ss Seq
GATGTATCC
5' ss Score
1.64
3' ss Seq
CCTTCTTAACGGCCACCCAGCGT
3' ss Score
2.79
Exon sequences
Seq C1 exon
ACAAAGACCTGCGGACCAAGGGCTTCAGCCTAGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT
Seq A exon
GTATCCTTCCGTTTGCTTTTGTCTCCTGAGTGGGGTTTTGGGTGGAGGTATCGGTGCTGGGAGAACTGTCCCAGGACAGCACAGAGAACAGGACAGAGCCATGCGGAGTGTGGACACACAGTGCCCCATGCTCAGATGTCTCCCTGGACGTCTTCCTGTTGGTTGGGAGGGAGAAACTGAGGCACAGACCTGTGTCAAGTGAAAGGTGGAGCAAGACCTGGGTCCCCATTGACCCTGAGGCTGGTGCTATTTCTGACCCCTCCCCAGCCCACTCCACTGCAGCCCAGCTCAGAGAATAAGGCAAGCCCGGCTGTGGGCTGACTGTACATGGCTTTTGCTGCTTCTCCTCACCCAGCCCCAAGTCGACTTGCCGGCTCGGCGGCCATCTCCCCTTCTGCACAGTTGCCCACTCTCCCATGACTGGTCTAAGTGATGGAATTTCCTTCTTAACGGCCACCCAG
Seq C2 exon
CGTGATGGCAATGGGAAGCTGGGCCTGGTGGAGTTCAACATCCTGTGGAACCGCATCCGGAATTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000014216:ENST00000533820:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
NA
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF134991=EF-hand_7=PU(5.5=21.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development