HsaINT0027336 @ hg38
Intron Retention
Gene
ENSG00000014216 | CAPN1
Description
calpain 1 [Source:HGNC Symbol;Acc:HGNC:1476]
Coordinates
chr11:65187955-65188488:+
Coord C1 exon
chr11:65187955-65188040
Coord A exon
chr11:65188041-65188413
Coord C2 exon
chr11:65188414-65188488
Length
373 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CAGAGCCCTGCTCCTCACAGCTC
3' ss Score
5.3
Exon sequences
Seq C1 exon
GTGAACTACCGAGGCCAGGTGGTGAGCCTGATCCGGATGCGGAACCCCTGGGGCGAGGTGGAGTGGACGGGAGCCTGGAGCGACAG
Seq A exon
GTGAGGGGCAGTGGGCACTGTCTGGAGTGCCTTGGGGAAACTGTTAGGTGCCCCGACATTTCTGCTCGGGACTCTACCAGGCCAGGCTGGACTCAGGATTGAGCAGAGGGGCCCATCTTCGCGCGACTGGGTCTGGGGGACTGCTCTGACAAAGCTCAGGCCGTGCGGGCCCCTGTGCCCAGCCGTCGGGTGTGTGCAGGGCATCAGACTGGCCCTGATGAGACCACCCCCTAGAAGCGGAACCTTGGCGCTTGACCTTGAGGAGGCCACCTGGGCTGGGCCGGGGGAAGACAGGCCAGGGTAGACAGGCCCCAGGGACAGAGGCCAGGCAGGTCAGTGCCCACCAGCCCTGGCAGAGCCCTGCTCCTCACAG
Seq C2 exon
CTCCTCAGAGTGGAACAACGTGGACCCATATGAACGGGACCAGCTCCGGGTCAAGATGGAGGACGGGGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000014216:ENST00000533820:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(7.5=87.5)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development