HsaINT0027381 @ hg19
Intron Retention
Gene
ENSG00000182472 | CAPN12
Description
calpain 12 [Source:HGNC Symbol;Acc:13249]
Coordinates
chr19:39221747-39224421:-
Coord C1 exon
chr19:39224343-39224421
Coord A exon
chr19:39221864-39224342
Coord C2 exon
chr19:39221747-39221863
Length
2479 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
3' ss Seq
CAGAAGCAGCCTCCCCCTAGGCT
3' ss Score
0.69
Exon sequences
Seq C1 exon
GCCATATTTAACAAGTTCGATGAGGACACCTCTGGAACCATGAACTCCTACGAGCTGAGGCTGGCACTGAATGCAGCAG
Seq A exon
GTGTGGACAGGGTCCTGGGGTGGTCGTGGGGACAGGACCTGTTCTCTCCCATCCCATTGTCTCCAAGTCCCCCTGCTCAGCTGTGGCCGTCTGCACTGTGGCCATCCACAGGCCCACACCTTAGCTTGTTGCCAGTCCCTGGCAGGGGTTGGGTGACCCTGAAAGAGGCCAAATAAGGAAGGAGAAGGGCAAGGGGCGTGTGTGGGGTGGGGAGGACATGAAAGGGGGATGTGCCTGGTAGGGGTTCTGGGGCAGGGAGAGGCCCCTCCAGGAAGGGGAAGATTAGGAGCTGGTATCTGAGAGGGTCTGGCCCCCAGGGCAGCATGGTAGAATGTTCTGGATTCTGGTGCACCGGGGTTGGAATCCTCACTCTACTGACTCCAGGAGGGGCCCTGGGCACTTGACTTCATCTCTTTGAGCCTCCATTTTCCTCTCTAAAATGGCCAGGGCCTGGTGTGGTGGCTCACACCTATGGTCCCAGCTACTCAGGAGGCTGAGGCTTGAGGATGGCTTGAGCCCGGGAGGCTGAGGCTGCAGTGAGCCGTGATTGTGCCTGGGTGACAGAGCAAGAGCCTGCCTCTCAAAAAAAAAAAAAAAAAGCTAGTACACAGGGTGGTGAGGAGTCGTCCATGCACTGCAGGGCATAGCACTTAGTGATTGGAGAATGCAGCTTTCATTACCAAAAGCCCCAAAGAGAGCCGGCCAATGGCCTCTGCTACTAGGCTGAGTTCCTCCTGATGAGCTGGAACAAGCCCAGCACAACATCCTAACCAAGAAAGAGAGCCAGAGAGAAAGGCTTTCCATGGGCTCCAAGGCAGATGAGACAGTACAGCACTGTGACCCTCATGTGGAGGGGATTTGGAGAGTGGGCTGGGGTCAGAACTTGGAGTTCCCAGATCCCCAACCCCACTCTGGGGCCTGTCTGCCACCACACAGCAGATGGAGCCACAGGGAGATGGGGGCTGGGGTGACTGTGATGGAGTCGGAGAGCCAGAGGGAGAGGGTTTGGGTGTGGCTGTGAGTGTGAGACCCAGAGAAGGTGGTCAAGTGTCCAAAAGAGCCAGCCGGGCGTGGTGGCTCACGCCTGTAATGCCAGCACTTTGGGAGGCTAAGGCAGGCAGATTGCCAGATTGCTTGAGCCTAGGAGTTCAAGACCAGCCTGGGCAACATGGCGGAACCCCCGTCTCTACTAAAACTACAAAAATTAGCCAGGCGTGGTGGTGCGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGACAGGAGAATCTCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCAAGATCATGCCATTGTACTCCAGCCTGGGCAACAGAGCGAGACTCCGTCTCAAAAAAGAAAAAAGAAAAAGCCCAAGTCAAAGGGGGAGAAATGGGGTCAGAGACAGCCAAGGATTGGGAGACGTGGGGCAGAGAGGGAGAGGCTGGGCCGGAGATAGACAGGAGTGGAGGTGAGGGAGCAAGGACTCACAGCAGGTGGCAGGTGGCAGGCTTGTGTTCACGCATCTGGCACCAGTGAGTGCCTGTTACATGCCAGGAGTTATTCCAGGAAGAAGGAAACTGATAAAGTGCCCTTGAGAATTTCTCAAACGGGAACTCCTGCAGTGGCAGCTGAGGGGCTCCAGCGCCTTCTCGGGTCCTTCCACCCCATCTGGCTGGGTTTCCCCATAGCCCTGGGCATGGCAGCCTCCACCCCTATGCCCGAGGGCAGATGAATGCCAGAGGGAGTGACCTGGGGCAGGTCACACGGGCAGGAAGAGGCTGCAGGCCACCTGCCCTCCTGTTAAAACAGCACCTGGCACTGGGCACAGCATGAAATGGCACTTACTTGGTAGATATTTGTGAAGAGAATGAACACACAGAATGGGGGTGAAGATGGGCTTTGGAAGCAGCAGAAGCCCATGAAACGGTACTTGGAACTGGGTTTGTCTGGCCGTGTGGGAGACAAAGGTCATCAGGCACAACCTTGCATCTCAGAAGGGGTCAAGAACCCATTGTTTTGGGTTTTTAAAAGCCTCCAATGAGACTCCACAGCAGACATGGTTTCTCAGCTTTAGAAATCGCCTCTGAGGTAGACTGTAAGGAAACTGACTCCATATGGGATTGACTATATTTTTTGCTGCACAGAAATATCCTCCAGTGCCCACTGGCAAGGAGAAAGCCCCACAGGATTTAAGGAGTAACAGTACCCACACATCGAGTCACGTGTCAGACGCTGTCCTGAGCGTTCTGTCTTCACACACCCTATGGGGTCGGGGCTGTCTTAGTCCGTTTGATGGATGAGGAAACAGGCCCAGAGGATTGAAGGGATCAGCCTGTACTCACCCTGCCGGGATGGGGCAGAGTTGGGGTGTGACACCCTGTGGCATTCATGTCCTCCCTGAGGAGGTGGGGTGGGGATGCAATGCCAAGGTGGGTTCCCTGTGGGCCACTGGGCTCAGAAGCAGCCTCCCCCTAG
Seq C2 exon
GCTTCCACCTGAACAACCAGCTGACCCAGACCCTCACCAGCCGCTACCGGGATAGCCGTCTGCGTGTGGACTTCGAGCGGTTCGTGTCCTGTGTGGCCCACCTCACCTGCATCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182472-CAPN12:NM_144691:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003627=EF-hand_1=PD(86.2=92.6)
A:
NA
C2:
PF134991=EF-hand_7=PD(46.3=77.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)