HsaINT0027430 @ hg19
Intron Retention
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:16664]
Coordinates
chr2:31423317-31424864:-
Coord C1 exon
chr2:31424728-31424864
Coord A exon
chr2:31423492-31424727
Coord C2 exon
chr2:31423317-31423491
Length
1236 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TTTATTTCTTCCCTGGCCAGGCT
3' ss Score
7.91
Exon sequences
Seq C1 exon
TTCTGGCACTATGGGAACTGGGTTCCTGTGGTGATCGATGACCGTCTGCCTGTGAATGAGGCTGGCCAGCTGGTCTTTGTCTCCTCCACCTATAAGAACTTGTTCTGGGGAGCACTTCTGGAAAAGGCCTATGCCAA
Seq A exon
GTAAGAAACCGGCAGAAATATCCCCCTTCCCATCGCTTCTTTTTCTCTCTCTCAATGTTGAGGGAGGGGAGTGGAGTCAGGTAAAGTTTATGAAATGAGATCCTGAGGCATGTCTTAGCCAACATAGAAGTGACAACGTATTCAGTCTTTTATGTAGGGGTCACCTCATCTAAACCTGCATTCAAGAGTTTTGCCTTTCCCTAATGGATAGAATTAAGGGGGATAGGAGCTCTGAGTGTATATTCTGTCCTTTGCTCCTGGGATGGAAGGAAGGAGTAGCAAGATACACCCAAAGAAAACCTAAGCAAAGGCTTCACTTCTCATTTGGCCCATCTAATCTACAGTTTAAATGCCTCTTCCTTTTGTTTTGAATGAAACCCTCTCAACGTAGCTGATCACTGCTGTCCCCAGCAGCTAAGAGGTCTGGATGAAGGAGTAGCAGCAGGGGATCCACCTGCTTGGGTCCCTGTGGGGCGGCCTGATCATCAGGGGTCAGATTGTGGGCACAGCTTCAACGACACAACTGCAATATGAAAGTTTAAGAGTTTTTCATACCTACAGACCCTAGAGGGTACTTGGCATGTATGGAGTGCACACACACACGCATGCACATACACATGCACACACACACGCAAACACAGACACACACATGCACACACACACATGCACACACACATGCACATACATGCACGCACACACATACGCACATGCACACACACACGTCCACACATACACACATGCACACACACGCACATGCACACACACACATGCACACATGCATGTGGAGGTCAGGGGGCCCAGGCGGAAAGAGAGAAAATGGACCTGTGGTGGACACATGCCTTTTCTTGAGTCCAGGGTGTTGTCCCAACAGGTTTCCCGCAAGCAGCTTTAACTGATGGGTTCAAAGCAAGCAGGCACTAGTTGAGATCTCGCTGTGAGTGACAGGCAGTCACTAAGTTCTCAGGCAAACGTCTGAATGGTCCATTTAAAGGAAGTGGTGGGAAAGAGGGGTTCCCAGTCTTCTAGGCAGGAGAGATGCCTCTAAGTTTTATCTATGACCACCAGCTGGAGCCATTCAGGATGGGTATGGTATTGGAAACTATGTCAGGGTTGCCTGAGCTCTGCTTTTGGTATGAGAAAACTAGACTCCTATTTAAAAGTGGATGCCGAGGCCACATAAAATTATAAATACTCATGATACTTTTTTCCTCTCATGTTTATTTCTTCCCTGGCCAG
Seq C2 exon
GCTCTCTGGTTCCTATGAAGACTTGCAGTCAGGACAGGTGTCTGAAGCCCTTGTAGACTTCACTGGAGGGGTGACAATGACCATCAACCTGGCAGAAGCCCATGGCAACCTCTGGGACATCCTCATCGAAGCCACCTACAACAGAACCCTCATTGGCTGCCAGACCCACTCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-CAPN14:NM_001145122:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(15.3=100)
A:
NA
C2:
PF0064816=Peptidase_C2=PD(3.0=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGCACTATGGGAACTGGG
R:
CCTGAGTGGGTCTGGCAGC
Band lengths:
310-1546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)