GgaINT0083303 @ galGal3
Intron Retention
Gene
ENSGALG00000009069 | CAPN14
Description
NA
Coordinates
chr3:7652840-7654241:+
Coord C1 exon
chr3:7652840-7652976
Coord A exon
chr3:7652977-7654068
Coord C2 exon
chr3:7654069-7654241
Length
1092 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
CTGATGTCTTTTTTTGCTAGACT
3' ss Score
6.56
Exon sequences
Seq C1 exon
TTCTGGCACTTTGGTGAATGGGTTGACGTGGTGGTTGATGATCGCCTGCCGGTGAATGAGGCGGGGGAGCTGGTCTTTGTTTCTTCAGTCTATAAGAATGTGTTCTGGGGAGCCCTTTTGGAGAAGGCATATGCTAA
Seq A exon
GTAAGTGACTCATTCTAAGTTATTAAAATAGTCTCTCTGAAACATGTTGGCTTGTGCCTGTGCAGTTTGTACTTGTTTATAAGTGCATCTCCTAGGCCTTGCCACATTTGGAATGTCGTAAATGGTTCCCATCTTTCTATTTTTAAAGAGTAAAATCTCCCACTGCAGTACCTCTTGCCAATTCAGGCCCTTGAGTTTAAATCCAAAGGTTTAGGATATGAAACAAAAACATTAGGGATTATTCCTTAAGTGGTTTCTTTTATAGTGGCTTGGCCAGGATGATGGCTTCTTTGCAAGCCCTGCAGAGGAATGGAAGGCCAAAGATAGAGATTTTCAAAGGTGAATGATTGCTGATGCCCCTCTTGATCTATTACCAGTTTGAGAAACCTCCAAGGAGTTTCATTTTGGGAGTCTGTTGATGAGTTCTACTTTGGTCTTGATAAAGATTCCTGCTCTGAGATCTTACAGAGCCTTCAACTTGTTCAAGCATTCGACAGGTCACGTGGCATACTGAAAATACTGGCTTCTCTCTTTGGGTTGTTTTGTCTAGGGTGGTTTATTGGGACTAAGAAGAAGGCAACAAGTCATAACTGATGGAGTTTGTTATTCTTGGGTTAAAATAATCTAAGCTGGGAAAAATAAGCAGAGCAGGAAAAAATTCTAGCTAGTACTGAGAGAAAGATCACCCAAAAGGAGAAAAAGCTCAGCTGCATTCGTTTGGTGGTAACGCTAGAACAAAAAGAGAAAGTTACTCTTCAGTCATGAAGAATATCAGATCGGAGGCTGAACTATTAAGGAGTATCAGATATGGTACAGTGTGTGGTGATATATTCAGGCAAAATTTGCTAAGGCAGAGTTATCAAAAAAGCAGTGATGGGCATGTCCTTGCTGCTGCTTACTGAGGAGATCAATAATGAGTGAAGCAGTTCTTTTCAGCCTATGGCCAGTCCTGGACACAATTTGTAGATACTCTTCTACCTACATGCCAAATATCCCCCTAACATTAAACATGAATTACAGCATACTTTGTGTTTAAAAACAAAATGTCTGTGGCTGTAAATCCAAGAGTATACTGATGTCTTTTTTTGCTAG
Seq C2 exon
ACTCTATGGCTCCTATGAAGATCTACAGATTGGGCAAGTTTCAGAAGCCTTGGTGGATTTCACAGGTGGTGTTAATATAAGAATCAAGCTTCCAGCAGCTCCTCCTGATCTGTGGGATATCCTGACAAGAGCAACCTACAGCAGATCTCTCATGTGCTGTCAGACACAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069:ENSGALT00000014761:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(15.0=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(19.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCACTTTGGTGAATGGGT
R:
TGTGTCTGACAGCACATGAGA
Band lengths:
303-1395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]