HsaINT1006316 @ hg38
Intron Retention
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr2:31200451-31202252:-
Coord C1 exon
chr2:31202134-31202252
Coord A exon
chr2:31200626-31202133
Coord C2 exon
chr2:31200451-31200625
Length
1508 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTATTTCTTCCCTGGCCAGGCT
3' ss Score
7.91
Exon sequences
Seq C1 exon
GAGACTGCTGGTTCTTGGCTGCTTTGCAAGCTCTGGCCTTGCACCAGGACATCCTGAGCCGGGTTGTTCCCCTGAATCAGAGTTTCACTGAGAAGTATGCTGGCATCTTCCGGTTCTGG
Seq A exon
GTGAGTGTCTTCCCGGGTCCTCAGCCCAGAGGGAGTCATAGGAAAAAGGGTTCCTGGAGGACCATGTCTTCACCTTCTGGGCTGATCACCATCTGCAGCAGTCCTCATTCACCCGGGGCCACTCTCTCCCTCCAGTTCTGGCACTATGGGAACTGGGTTCCTGTGGTGATCGATGACCGTCTGCCTGTGAATGAGGCTGGCCAGCTGGTCTTTGTCTCCTCCACCTATAAGAACTTGTTCTGGGGAGCACTTCTGGAAAAGGCCTATGCCAAGTAAGAAACCGGCAGAAATATCCCCCTTCCCATCGCTTCTTTTTCTCTCTCTCAATGTTGAGGGAGGGGAGTGGAGTCAGGTAAAGTTTATGAAATGAGATCCTGAGGCATGTCTTAGCCAACATAGAAGTGACAACGTATTCAGTCTTTTATGTAGGGGTCACCTCATCTAAACCTGCATTCAAGAGTTTTGCCTTTCCCTAATGGATAGAATTAAGGGGGATAGGAGCTCTGAGTGTATATTCTGTCCTTTGCTCCTGGGATGGAAGGAAGGAGTAGCAAGATACACCCAAAGAAAACCTAAGCAAAGGCTTCACTTCTCATTTGGCCCATCTAATCTACAGTTTAAATGCCTCTTCCTTTTGTTTTGAATGAAACCCTCTCAACGTAGCTGATCACTGCTGTCCCCAGCAGCTAAGAGGTCTGGATGAAGGAGTAGCAGCAGGGGATCCACCTGCTTGGGTCCCTGTGGGGCGGCCTGATCATCAGGGGTCAGATTGTGGGCACAGCTTCAACGACACAACTGCAATATGAAAGTTTAAGAGTTTTTCATACCTACAGACCCTAGAGGGTACTTGGCATGTATGGAGTGCACACACACACGCATGCACATACACATGCACACACACACGCAAACACAGACACACACATGCACACACACACATGCACACACACATGCACATACATGCACGCACACACATACGCACATGCACACACACACGTCCACACATACACACATGCACACACACGCACATGCACACACACACATGCACACATGCATGTGGAGGTCAGGGGGCCCAGGCGGAAAGAGAGAAAATGGACCTGTGGTGGACACATGCCTTTTCTTGAGTCCAGGGTGTTGTCCCAACAGGTTTCCCGCAAGCAGCTTTAACTGATGGGTTCAAAGCAAGCAGGCACTAGTTGAGATCTCGCTGTGAGTGACAGGCAGTCACTAAGTTCTCAGGCAAACGTCTGAATGGTCCATTTAAAGGAAGTGGTGGGAAAGAGGGGTTCCCAGTCTTCTAGGCAGGAGAGATGCCTCTAAGTTTTATCTATGACCACCAGCTGGAGCCATTCAGGATGGGTATGGTATTGGAAACTATGTCAGGGTTGCCTGAGCTCTGCTTTTGGTATGAGAAAACTAGACTCCTATTTAAAAGTGGATGCCGAGGCCACATAAAATTATAAATACTCATGATACTTTTTTCCTCTCATGTTTATTTCTTCCCTGGCCAG
Seq C2 exon
GCTCTCTGGTTCCTATGAAGACTTGCAGTCAGGACAGGTGTCTGAAGCCCTTGTAGACTTCACTGGAGGGGTGACAATGACCATCAACCTGGCAGAAGCCCATGGCAACCTCTGGGACATCCTCATCGAAGCCACCTACAACAGAACCCTCATTGGCTGCCAGACCCACTCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711:ENST00000398824:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(39.0=100)
A:
NA
C2:
PF0064816=Peptidase_C2=PD(3.0=50.0)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTGCTGGTTCTTGGCTG
R:
GGGTCTGGCAGCCAATGAG
Band lengths:
286-1794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains