HsaINT0027433 @ hg19
Intron Retention
Gene
ENSG00000214711 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:16664]
Coordinates
chr2:31417275-31420200:-
Coord C1 exon
chr2:31420115-31420200
Coord A exon
chr2:31417350-31420114
Coord C2 exon
chr2:31417275-31417349
Length
2765 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
ATTCCCTTTTCTATTTTCAGTTC
3' ss Score
10.52
Exon sequences
Seq C1 exon
GTGACCTGCAAACATAGACCTGAATATCTCGTCAAGCTACGGAACCCCTGGGGAAAGGTGGAATGGAAAGGAGACTGGAGTGACAG
Seq A exon
GTGAACTTTGGGGACATCTTGGAGGGGTGAGAACAGGTAGGTTAGGCAAAGGAGGCTGCCATTTGCACACAGATTCAAATGTGTGCTTTCTTTGGTCTTAGGCTGGATCAGGAAGCCTTTAGACGGGGAAGCTCAATCCCTCACATTTAGAAGATGCTTTATGGTATAGAGACTGCTTTCTCTTTCATTATAATAATTAAAGCTGATGTTTGTTTGAGGGCTTGCCAGCATTGTGCTAAACCTTTTGAATTTTTATTATCTCATTTAATCCCCCAAACAACGCTATTACAAAGTAGATAGTTTTATCCCCATTTTACTAATAGAGAAACTTGGATTAATTGAATTGCCTAAGGTCATACAGCATGACTCAACCAAGGTCTTTGGTGCCTGGGTTCAGTGTCTTTCCCTGGCATGGTTCAGCACACCTGGGTTTGCTGAGTCAAAGGTAGACAGATTTGGATTGGACTCTACACTCTGATTACATATAGTAGCCTCTGGGCATTCTGATTAGGTGCCTACATTTAGGTTGTTTCTGCCTAATGGCAGCCCTAAAGAAATGCGGGTTTTGCAGGCTAGACACTGGCTGTAGGGCACAGGCAGAAAGGGAGGTCAAGTCCTAAAGTCCTTCATTCTGTCATTATGAAGATGTATAATACTTAATCCTTTACAGGTCTTCAGAGTCTACAAACGTGTCCATATACACATTATCACTTAATCATTTTTATATTGATAAAATGAAGGCTTAGAAACACAAGTTGAATATTCCTCCTGATAGAATGTGCTGCATTATATTTGTTACACATTAGTAAACAGTGTTGTTAGAGGAACTGAATCTATGTGGGAAGATGTCATCCAAAGAAATACATAAATTTTAACATGCTACAGAAGTCTAGCATCATATTGTTGCTGGTGGCGGTTTCTTTCATAGAGGAACAAGCACTAACATTAGAGATAGATGATGGGTACAATTACAGTGTTGTTACTTTCTAGCTGTGTGATCTTAGTTTAGGCAACCTTCTTAAGTTCTTGGATCCAGAGGTATAGTGAATATTAAAATGATGAGCTTTTATTTTGTAGTGTTTAATCTGCTGTTAATCCCATCCAGTATATTTTTCATTTTAAATATTATGTTTTCAATTCTAGAAATTTCACTTGAGATTATCTTCCATTTCTCCCCTTTTTATGTCCGTGTTTCTCTTTACATCCTTGAGAATATGCGGCACTTTTATAATAGCTGTTTTAATGTCCTTATCTGCTAATTCTATCATCTCTCTCATTTCTACGGTGGTTTCTATGGACTGTTTCTTTATTCCAGGTCACGGATCATATTTCCTGCTTCTTCATATGGCTAATAACTTTTTATTGCATGCTGGACATTGTAAATTTTAGTTTCAGAGTACTGAATTTTATTGTATTTCTTTAAAGAATATTGGACTTTTTTTAAAGTAGGTAGTTACATTACTTAGGGATTGTTTTGATACTTTGAAGTTTTTAAGCACTTTTAGGGAAGGTCAAGACAAACCTTTATTTCAGGGATAATTTGATTCCACTACTAAATTGTAGACCCTCTGGGATCTCTAGTAAAGATTCCATGTATTCAATAAAGTCTTTTGGCTGGGCATAGTGACTCACACCTGTAATCCCAGCACTTTGGGAGGTCGAGGAAGGCAGATCTTTTAAGGTCAGGAGTTCAAGACCAGCCCGGCCAACATGGTAAAACCACGTCTCTACTAATACTGCAAAAATTAGCCAGGTGTGGTGGCATGTGCCTGTAATCCCAGCTGTTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCGTACGTGGCAGAGTGAGAGTCTGTCTCAAAAATAAGTGAATAAATAAATAAAGTCTTTTAACTCTGTCCGGTAGGAATGCCTGAGATTCCCAGCACTGTGTCCTGCTTACGGTCCAGTCTTAGGGAGTTTCGCTTTCAGAAAGCACAGATTAAAGCTCAGCCAAAGACGCAAGGGAACCCCTGTGAAGTTTCCTGGAACTCCTTTTTTTCATGTAGCCCCCTCCTTTCGGATACTTTGCCCAGCAAATTCTGGCTGTCTGGATCTCCCCAAACTCCAGATTCTGTCTCCTCCACTCAGCCAGACTGTTATGTTCTTTTTTTGAGTCCCTCTCCCTGTAGCGCTGGCCAGGAAATTACCTTCAGGAAGAAAGCCTAGGTGATGTTAGGGCTCACCTCGTTTGTTTCCAGCCTCCTGGGATCACAGACCCCTGTTGCCTGCTGTCCAATATCTGAAAACAGTTTCTCATATTTTGTCCCATTTTTATTTCTTGATGGTAGGAGGCTATCAGGACAGTCTTACTCCTTCATGGCCAGAAGTAGAAGTTCAAATGATGAGCTTTGAAAAATGCAAGTTCAAATGTTAGCTCTGACGTTTAATAGATATTTGACTTCAAGCAAATGACCTAATCTCTCTTAACTTCAGTTTCCTAATCTCTAACATGAAAACAACAAAGTTGTGGTTAGCCTTGAATGAAATAATGTATGTCAAGAATCTAGCCCAGTGCTTGGCTCATAGTAAGCTATCAATTCATGTTCATGCTACTGTATAATATGGAATGGGAAATTTAGTTGTCTGAGGTAGTATGAAAATAATAATAAATAATGACACTATAGAGCCTTTACTAAAGAATTTCTAGCATGCTCCCCACAAGCTTTTCATTCCCTTTTCTATTTTCAG
Seq C2 exon
TTCAAGTAAATGGGAGCTGCTGAGCCCCAAGGAGAAGATTCTGCTTCTGAGGAAAGACAATGACGGAGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000214711-CAPN14:NM_001145122:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.5=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)