GgaINT0083306 @ galGal4
Intron Retention
Gene
ENSGALG00000009069 | CAPN14
Description
calpain 14 [Source:HGNC Symbol;Acc:HGNC:16664]
Coordinates
chr3:7640238-7641624:+
Coord C1 exon
chr3:7640238-7640323
Coord A exon
chr3:7640324-7641549
Coord C2 exon
chr3:7641550-7641624
Length
1226 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
CCCATACTTTTTGCCCTCAGCTC
3' ss Score
8.4
Exon sequences
Seq C1 exon
GTGACCTGCCAATATGGACCAGAAAACCTAGTGAGACTGAGAAATCCATGGGGTAAAATTGAATGGAACGGAGACTGGAGTGACAG
Seq A exon
GTGGGTTTGAAAAATGGAAGGTTTGATGCTCAGTGTGAGGGAAAGTTTCTTAGAGGAAGGATGCTGCCATCTTCAGACTCAAATTAGGAGCTTTAAGATACGTAGCTGTTGCTTGCCCAGGCCCTCTGTTTTCAAAACAATGATTTAAGAGACTAATGTTTCTCCAACAGCAAATGCTTGTGTAGATGGCCTCACGTCACACATGCAGCTTCGATAAGACTCGATTCTGCTTTTCAATTCTTTGAAGTGCCAGAAGAAACATACTTGGAACATCAGATGCTGTGTGTGTTGCTGTGATCTAGGTGGCATATAAAGTGACAGATGATAGTTTAACAATTCAGGAGGCTTTAAACGGGATATTTAAGAGCACTCAGCCCCTTATCACAAGTGGGACCAGGCCAAGACCTCCATGTGCTGCAAAGTGTTGGAGTTGGGTGGCTGAAGGAGTCCTTCATCCACACTGCTTGGGGAAGCATGTAACTAGAGAGGCAAATGGGCCATATATTTAATCTGCCTTGATTTTTTTGATGTGAATAACACTGGTTTATATTCCAGACCATGAGCAACTGTAGACTTCTAGCCCGATTCTCTATGAATGAGAGTATATTCCTTCTGCCCCAACTTTTATTTTCATTTGCTGCATAGGCCCCATTTGCTGAGGCTCAGGGAAGGGGAGGGAGGAGATGAGCACAAAGAGGTGTTGGGAATATGAGTGACTTTCACCTTGTCTGCAGAGCAGTACTTTCTCTGCGTGTCTGCCACATAATGACAACATACCAGCTGTTGCTGTTGAAGAACATAATGAACAGCATACCATAGGCTTGCCTTTTAAATGACTCCCAGCTGCCTTTTTTGCTGTCCTATTCATTCATTTATTATGCCAAGCACTGTTCCTATTACGTCTCTTTTGACAGAAAATTAACCAGCAAAACAGGCCTAGATATTTGTATTTTAACTACTAGGAATCTGTGTGTGCAAGTGATTGGACCAGCTGATGGAAGCGGAGCCTTTCTACTGGAGAGAACTGGAGCTGTTTAGCTATCTCATATACCCAGTATACTCGTGGAGAGTCTGAAATGGCTGATGGCACAGGGGGCCTGTATTCAGCAAGGGTTAAACATGGAGATCTGTGGGGACAAGGGTTTTGGTATCCTTTTATAGAGGAGACCCATGTTTTCTGTATGCAGGCTGCATTTGCTTAGTCACCCCATACTTTTTGCCCTCAG
Seq C2 exon
CTCTTACAAGTGGGAGTTGCTGAGCCCAAAGGAGAAAATTCTGCTGAGGAAAAAGAAGGAAGATGGAGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009069:ENSGALT00000014761:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.3=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]