DreINT0041270 @ danRer10
Intron Retention
Gene
ENSDARG00000012341 | capn9
Description
calpain 9 [Source:ZFIN;Acc:ZDB-GENE-010724-2]
Coordinates
chr1:53235689-53236779:-
Coord C1 exon
chr1:53236694-53236779
Coord A exon
chr1:53235767-53236693
Coord C2 exon
chr1:53235689-53235766
Length
927 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TTCTCATCTTGTCTTTTCAGTTC
3' ss Score
10.65
Exon sequences
Seq C1 exon
GTCAACTACAGAGGAGCGAAGGTCCAGCTGATTCGTGTACGTAACCCCTGGGGTCAGGTGGAGTGGAACGGGCCGTGGAGTGACAA
Seq A exon
GTAAGCATCCTTCTCATACTTCAGCCTCCACATCAAAGTTCCTGAAAGCAAAGGTCAAGGTGCTTCAGGATTGGCCAGCCCAGTCACCAGATATCAACATAATTAAAAGCCTTATCAAAAATGCCTTGATAGAAAATTTTTAAAAACTTGTTCAATTCAGTCAATCTTGGTAAGAAAAGGCCAATAAAATAATTTTTGGGCCACGATGTTTAAGTAACCGTGAGATCTACTAATAAGGATATGTTCACTCAGGATGTTATTTGTGAAGTACTCATATTTTCATTTAAAAGAACGCTTATCTTCATATATGTTGATATTCTTGAATGTTTAGTTTGGTAGACCAGTTTGGTTTTATATTGTGCTGCTTACCAAAAATTGAGAAATGGTCACTCAAGACAAAACATGGTAATAAAATGCATTTAAAAACATCTGCATCTTCAGTTTGACAGGTACTGTTTAACAAAAAAACTCAACTTAAAAGGACCATTCACTTAAAAATGAAAATCTTGTCATCCTTTACTCATTCTTTACTTGTTTGCAAAAGAAGAGATTTTGAAAAATGTTGGAAACCTGTAACCACTGACTTCCATAGTATTTGTTTTTCTTACTATGGCAATCAATGGTTACAGGTTTCCAACATTCTTCAAAATATCTTGTTTAGTGTTCAACAGAGGAAAGAAATATTTATAGCCACTCCAGGGAGAGTAAACAGTGAGTAAATATTCATATTTGGGTGAACTGTTCCTTTAAGATAAACAGAGTAGCTGGTTTTCAAGCACATGAGCATTTCCACTATGAAAGCAATCCAATCAAATATGTAATTATCTAGAACACAGTGTTTACCCAGTGGCATCACCCACTTGTGTTCAGACTGACAATAAATCCTTTTAACACAAGATCCAAATGCTTCTCATCTTGTCTTTTCAG
Seq C2 exon
TTCGAGAGAATGGACTGTCATTGACAGCTCAGAGAAGAAACGATTGCTGCAAAACTCCCTGGATGATGGAGAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012341:ENSDART00000007732:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(9.5=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]