HsaINT0027455 @ hg19
Intron Retention
Gene
ENSG00000162909 | CAPN2
Description
calpain 2, (m/II) large subunit [Source:HGNC Symbol;Acc:1479]
Coordinates
chr1:223900119-223905533:+
Coord C1 exon
chr1:223900119-223900579
Coord A exon
chr1:223900580-223905463
Coord C2 exon
chr1:223905464-223905533
Length
4884 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGA
5' ss Score
8.6
3' ss Seq
TTTGTGGGTCTCGTTCCCAGGAG
3' ss Score
8.52
Exon sequences
Seq C1 exon
CAGGCCGCAGGATGGCCTGGTCCCGGGCCGGGAGCCCAGCAGGCCGGGAGCGGCTGAGGCCACACCCCGCGGGCCGGGCCGCTTCCCTCCGGTGAATCATCGCTCGCAGCGGCGGCGCCCGCAGTGGCCGCAGCAGCGCGCCGGGCCCTGGCCGCGCCCCAGCCGAGCGCAGCGCGGAGTCGCCCCGACCTTTCTCTGCGCAGTACGGCCGCCGGGACCGCAGCATGGCGGGCATCGCGGCCAAGCTGGCGAAGGACCGGGAGGCGGCCGAGGGGCTGGGCTCCCACGACAGGGCCATCAAGTACCTCAACCAGGACTACGAGGCGCTGCGGAACGAGTGCCTGGAGGCCGGGACGCTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGGCCCTGGGCTTCAAGGAGTTGGGGCCCTACTCCAGCAAAACCCGGGGCATCGAGTGGAAGCGCCCCACG
Seq A exon
GTAGGAAGCGCGCGGCAGGACGCGGGCAGGGCGGGGTGCCGGGCAGGGCGGGGTGCAGGCCGGCCCGCGGCGCGCTGGGGCGGGGGGCAGCCCGGGTGCTGCAGTGGGGAAGCCGCAAGCCAGGACCTCGCAGTCCTGCGACACCTCCGCGCCGCCAGAGCCCGGGACTCTGTTCGAGCGTGGGGGGACTCCCGGGGCCTTCCCTCTCTTCCACCCACCACGCTTTCCTGGGCGGGTCGAGGCGAATCACTGCCCTCAGATCCCACTAGCAGGCCACTTTAGGACTTCACAAAAACTCAGGGTGATGCAGGAGGCCGGGGTGAAACTTTGATTGGACTCTAGCGGGGAGCTGGAAGGGAAGGGGAATCGGGTCTGCAGGGAAGGGACGGTGAGAGGCAGCATCTACCAGACAAAGTCCGTCTCCAACTGGGGTTCTGTCTGTTCATGGAGGGGGACAGGCCATAGCCTGGTCATTTTGTGACTAAGGATAGTCTCCTGCAGCCCTGGGGTTAGATTTATTTTTCCAAAGGGGAGCCAGCGATACCTCCTCATAACATTGACACTGGTAATTAACCCAGGACACGGAGGTGTCTCATGGTTTCCCTGGCGGGAATCACCCGGGAAACCTCCGGGAGCCCTCCAGACCCCCTTATCCCGTCCCCCAGGGTCTCTGACCTCCCGGCCCTGGGACAACTTGTGCTCCCCAATCTACTTGTCCATTCTGTTTCTTGGGGAACCCCTGAGGCTCCTCCTCCTTTGGGACACTTCCCCAGGCTTCCCCTACCACGCCTAGGAAAGCCTGCCCTGAAGTCCAACTTCTAGATTCCTGTTGTGAGAACAAGGCTTCCAGCTCTGCTTCCACACCCAGCAGCCTCCCAGGTCACCTTCTGTTACCCTAAATCCAGCCCATAGGTAGCAAGGGCTGCAGGAAGCGCCCTAGCCCAGACTCAGAGCACTTGGGTTCTTCTTCTTGCTAACCTGCTGGTGACCTTGAACGAGCCATTTAACCTCTCTGTGCCTCCATGTCTTCATCTAAAAGAAAACATGCTGCCTAAATATTTTCTCTCTTTTGTGGCCCACTAGGCCCTGCCGTCATGGCCTCCTTTCAGTCTCTCAAAGAGCCGGTTCTTTCCTGCATGAGGCCTTCTCACCAGCAAGGCACGCTGTTACCTGGAGTGTGGCTCACTCTCATTCTTCCCAACTTAGTCACATGTTCCCTTCCTAAAGAGGTCTTTTCTGACCCTTCTTAGCAGCCACCTCCCCACCTTGTTTTTCTCTGTCACCCCACTCATTTCCTTCATAGCATTGTCACAGTTTAGAATATAATCACATGTATTTGTTCTTCCTACTGAACTGCAGGAATCATGTGTATATTATTTACCAGTATATCCCCAGTGCCTGACACATAACCATGCCTTTCACAGTATTCATTCATTCATTCATTCATTCATTTACTCACTCATTTGACAACACTGATTGAGCACCTGTTACATGCCAGGCACTGTCCTGAGAGCTCAGGAGATACACCAGTGAACACAAAAGAAGTGACTGTTTGTAGAATATGGATGCAGGATTGTAATGTGCCTCAAATGAAATTATGGTTGTGAAAGTGATACGCTGACCTGACTCAGTGCCTCACACCTGTAATCCCAGCACTATGGGAGGCCAAGGTGGGAGGATCGCTTGAGCCAGGAGTTCAAGACCAGCCTGGGCAACACAGTAAGACTTGTCTCTATAAAAAAGTAAAAAAAAAAAAAAAAAAAGTGAAACACAAACCAAGAGAATGTGTTCACTTTACATTTGCATGGCACTTTACAGTTTACATAGTGAGTTCACATACTCATTCACTTATTCTTTCATTCATTCAGTAAGCATTTCTCGAATACCTACTATATGCTGGGCACAATGCATATGGTTTCTGCTTCTGAAGACTTACTTCTGAGGCTAGTGAGGGGACAGAGACAGGTCCCCCAACAGTTGGAAATGCCTGTGGGACTTCCAGATGAGGATGTAGAGGTCTAGAGATGATCTAGCGCCACTGCTTAGGGCAGGCGGGCTGTGCACTGCACAACTAAGGAAGAGTGTGACTTTTACGATCCCCATTTGCCAGTTGAAGAAATTGAGGCTTGGGAAGGTTAAATACTTGCTCAGAGTCAAGTGGATATAGGGCATAGATCCAGGACTGTGTGTAGTCTGTGCATGTTGAGCCTACCCCTTATGGCTGCGCTCTCTGCCTCCTTCCTACCTTCTCAAATGCTGCTGAGGTCAGGCAAGGGGAGCACAGTTGTTTCCGCTGGATTTGAACACTAGCAAGTCATTGGTGAGTTTAGCAGAGCAATTTCAATGGAAAGGTGAGAGTAGAAGCCAGATTGTTGTAGACTCCAGAGTAAAGGAACTGGAAATTAAGAACATGATCAACTTATTTAAGAAGGACCCCCGGGAAGAGAGGAGAACTGATAGGTAGAGTAGGACCTGGACTTTGAGAGCCTGTGTTTTTTTCATATGAGAACAACTTGAATGTGTCATATGTTGAATCACCAGGAAGAAGGGATTAAAGATAAAGGCAGGGAGGGGGCAGTGAAACAGGATCCCTGAGGAAGTGAGAATACGGGTTGTGGGCAGGGGAGGGGAGCAGGTTAGCCTTGCAGCAGGAGGAGCTGCTCTTCCTCGGAGAGAGGATTTCACAACACTGGCAAGAGTGGCTCCAGTGCCTGGAGCGGGGATTAAAGCAGTAAGTCCAGTGGGGTCCAAGGGCCATGCAGGGGTACAGTGAGGAGAAAGCAGGTGTGATCCGGGTGGCACATCAGATCCTTCCAGCAACCAGTCTGTTAGGAGCAAGGGCAGATGTTGTGAGCCCCTATGTTTCCCCCAAGAAAATCAAACCTCTGAGAGGTTTCTCACTTGCTTATCTTCAGCTGGCCGAACTCAGCCTCAAACCCATATGTCCTGTCTCCAAGTTCAGTGACTGTTATCATCAACTTCTTCAACAGTAATAATAATAGATCACATTTATGGAGTGCTTGCCAGGGCATGTTTACATCATTATCTCATTTAACACTCAGAACAATCCTCTGTGGTGGGTGTTTTCATCGTTCCCATTTTGCAGGTGAAAAAACTGAGACTTCAAAAGGTTAAGTGACTTCCCAGGGTCCTACGACCTACATAATAAGTGGCAGAGCCAGGATTCAAACCTAGGTTATCAGAATAATGCAGCAAAGCCCAAACCCTCAGCCCCTTTTCACTGACTGGTAAGACCCATATTTAATTCGATGCCCTACATGCCGTGCACAAGTTTCAGTTTTCTGAAGCATCGCTTAGATGCTTAGGTGTTTAGCACCACTCTGAACTCTGACTTTTCTAGAGAGGCTGCTAAAGGCATTAGAAAGTTTCTGAAGTATAATGGAAAAACCCTGCTGGAGTAAGTGCCTGGCACACTCAGGATTATCAGTGTGATTCTTTATAATAAACAGGCTCCCAGCACCAAGCCCAATCTATTCCATCAGCTGGATAAGAGCTCTCTGGCAGGCCTTGGGCCAAGCTGGCTTCCTTTGCCTCAGCAGAAGAGCATTCTGATTCTCTCTGCCATCCCCAAAACTGACAGGAGCAGAGAGAAACAAGGCAGAGGCATGAAGGGAATGTCCTCTGCGGCAGATGGTGCTTCCGGAAGAGCTCCCACAATCTGAGCTAGAATGAACAGGGGCTAGATCCAAGTCTCATATAGGCATACTTCTGCTTGACAGAGTGGGCATGCCGAGGGCCGTTGGGTGGAGGCAGGCGTGTGCAACCCAAGCAGACATGAGACGCAGCTCCTTCAAGGCAAGGTTGCCTGAGCCCAGAGAGGCTCAAATTTGTGCCCCAACTTCCTCTGTGGCTTTTGGGTGGGGCTCTTCAGAATCGAAACACACTCAGAGGGCTGCTGAAAGGGCTAAGAAGTGTTCAAGGTTGGCTTCCATCAGGCTGCTCATGACAATGGCCCCTGAGGTTTTAACACCCTTGAACGCTTGGTACTAAATCAATTAGAGGCAGGGCAGGAGCAGAAAGAGTTGGCGCATTTGATCAGTAAGTTCCAATGCCAGTGCTGTCTATTATCTGTGAACTGTGTTAACTTTGGACACGTCACTTCACCTTTTTGAGCTGTTTCCTCGTCTGTAAAAGGGGGATAATACCCATTCCATGAGGTAAAGCTTTGAGCACAGTCTCTGATGTAAGCAGGTACAGAATATATAGATGCTGTAAGTTTCATGGTCCCATGGAAGAATTCAAAAGGGTTAGATCCCGCCTGCCCTCAAAAGGGTATGTGTTAGGAAATCAGAGTAATACCTAAGTAGTAAATTGCAGAGTCCAGAGACTCTGGGACTCAGACTTGAAGGGATGAGTGAGGATTGGACTAGGACGACTTCACGGAGGAGGTGACAATGAGCCTCAAGGTATGATGCAATATGGAAAAGGAGGGAAGAGAGTGGGAAAGGAAGGAATTTCATGCAAGCAAAACAACTTGCATGCAGTAACAGAGGAGAGAGGATGCTAACCCAGTGGATAGGGTGGCTCTAGAGTGTGGATGGTCTCCACGTCTGGCAGAAAAGGCTGGACTTGCTGCTGTGGCCCCCGGGACACAGCACAATGAAGGAGGCTCCAGGCAGTCCAGAGTGTGCAGGGTCCAATGCCTGCCCTTCTCAGACAGGACCACCCATCCACCCATCAGGGCCCAGGGAGCAGGGGTCAGAAGGACCTCATGACACAGAGTTCTGACTGTGATGACACACTTTCCCCAGAGGGGAGGGGAAGGGGAGAAGGGGTTAGAAGACCCCACTGAGAATGGAGGCATCCTAGCTGCAGAAGCACCTGGCTGGTAGGCTAACAGCACTTTGTGGGTCTCGTTCCCAG
Seq C2 exon
GAGATCTGCGCTGACCCCCAGTTTATCATTGGAGGAGCCACCCGCACAGACATCTGCCAAGGAGCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162909-CAPN2:NM_001748:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.3=43.0)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)