HsaINT0029133 @ hg38
Intron Retention
Gene
ENSG00000135205 | CCDC146
Description
coiled-coil domain containing 146 [Source:HGNC Symbol;Acc:HGNC:29296]
Coordinates
chr7:77278752-77279101:+
Coord C1 exon
chr7:77278752-77278840
Coord A exon
chr7:77278841-77278936
Coord C2 exon
chr7:77278937-77279101
Length
96 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
AACACTTTGTATTTTTACAGACT
3' ss Score
7.88
Exon sequences
Seq C1 exon
CAAAAATACACCAACATTGTTAAAGAAATGAAAGCAAAGGATCTTGAAATCAGGATACACAAGAAGAAAAAATGTGAAATTTATCGGAG
Seq A exon
GTAAAGTAATTATGTGGTGTTTTATCTACGTAGGTGAGGGGAAAAAAACCTGATGTTCATTTCATAAGTTTCAGTAAACACTTTGTATTTTTACAG
Seq C2 exon
ACTGAGAGAGTTTGCTAAACTGTATGACACCATTCGAAATGAAAGAAACAAATTTGTTAACTTACTCCACAAAGCTCATCAGAAAGTAAATGAAATAAAAGAAAGGCATAAAATGTCATTAAATGAACTTGAAATTCTGAGAAATAGTGCCGTTAGTCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135205:ENST00000285871:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACATTGTTAAAGAAATGAAAGC
R:
ACTTTCTGATGAGCTTTGTGGAGT
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development