MmuINT0030406 @ mm10
Intron Retention
Gene
ENSMUSG00000064280 | Ccdc146
Description
coiled-coil domain containing 146 [Source:MGI Symbol;Acc:MGI:1922422]
Coordinates
chr5:21305253-21305601:-
Coord C1 exon
chr5:21305513-21305601
Coord A exon
chr5:21305418-21305512
Coord C2 exon
chr5:21305253-21305417
Length
95 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
AAACCATCTCATGTTTTCAGACT
3' ss Score
6.8
Exon sequences
Seq C1 exon
CGAAGATATAGTGAGATTGTTAAGGAAATCAAATCAAAGGACCTTGAAATCAGGCTATACAAGAAGAGAAAGCATGAAATTCATAGGAG
Seq A exon
GTAAAAAGAATTTGGTAAAAAAGAATCACGATTTAGTTATTTGGGCAAAAGTGTTACTTGCTTTTTAATTTTCAAAAACCATCTCATGTTTTCAG
Seq C2 exon
ACTCAGAGAATTTGCCAGCTTGTATGATACAATTAGAAATGAAAGAAACAAATTTGTAAACCTACTTCACAAAGCTCATCAGAAAGTAAATGAGATAAAAGAAAGACTCAAAATGTCATTAAATGAGCTGGAAATCTTAAGGAACAGCGCTGTCTCTCAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064280:ENSMUST00000115245:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAAGCATGAAATTCATAGGAG
R:
GAGAGACAGCGCTGTTCCTTA
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types