HsaINT0029235 @ hg38
Intron Retention
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:HGNC:28303]
Coordinates
chr19:11421677-11422627:-
Coord C1 exon
chr19:11422471-11422627
Coord A exon
chr19:11421833-11422470
Coord C2 exon
chr19:11421677-11421832
Length
638 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGC
5' ss Score
5.59
3' ss Seq
CGGCTCTACCCTGGCCGCAGGAG
3' ss Score
6.12
Exon sequences
Seq C1 exon
CCAGCAGAAACTGCAAGCCGAGGCGCAGGAGCGTCTCAAGAAGGAGGAGCGGCGGCACGCCGAGGCCAAGGACCAGCTGGAGCGCGCCTTGCGGGCGATGCAAGTGGCCAAGGACAGCCTGGAGCACCTGGCCAGCAAGCTGATCCACATCACTGTG
Seq A exon
GTAGGCCCCGCCCAGGGGAAGCCCCGACAGGCCCTCCTGGGACCGCAGAGGCGCAGCCACGAAGCGGGGTTCCTGCCACACCAGCTTGCCCGAGGGAACGTGGCCTGCCACATCCTCTGTCCCGGACGTCAGAGGCCCCGCCCACAGGGGAAGCCCCACCCCATTCCTCAGAGTCCCCGCCCCACCTCCCTGGGGAAGCTCTCACTCCCCAAGGAAGCCCAAGACGTCAGAGACCCTGTCCCGTCTCAAGCTCCGCCTCCAAGGGAAAGAAGTCCCACCCTGTCCCCGAAAAGCTCGGAGACCTATCTGCAGTTCTGGAGCAGCCCGAGACAGAAGACCTATCCTGCCCGCAGCAGAGGGCCATTTCTTCAGGAGGCCATCCCACAATGGCCTCCCTCGAATCCTTACTGTTCCCAAGAGGCCTCCCCGAAACCTTTACATATAGAGTTAGAGTTCAGAGGCTCCCCCATCACAGACGTGGCCTTGACCTAAGTCCCCGCCCCCAATGGCTAGGATCGACCCTGCAGGTGGGCCCTTACCTCCTAGGCCCCGCCCCCGAAAGAAAAGCCCCGCCCCTGGGTGGAGCCTTCCAAGAGGCCCCACCCCTCTCGGCTGACCCGGCTCTACCCTGGCCGCAG
Seq C2 exon
GAGGACGGCCGCTTCGCGGGAAAGGAGCTGGATCCCCAGGCAGATAACTATGTGCCAAACCTGCTGGGCCTCGTGGAGGAAAAGCTGCTGAAACTGCAGGCGCAGCTCCAGGGCCACGACGTGCAGGAGATGCTGTGCCACATCGCTAACCGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003:ENST00000356392:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=NA C2=0.058
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAACTGCAAGCCGAGGC
R:
TTAGCGATGTGGCACAGCATC
Band lengths:
302-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development