MmuINT0030496 @ mm10
Intron Retention
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21990802-21991764:-
Coord C1 exon
chr9:21991608-21991764
Coord A exon
chr9:21990958-21991607
Coord C2 exon
chr9:21990802-21990957
Length
650 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
3' ss Seq
TTGGCCCGTCCCCACCACAGGAT
3' ss Score
7.84
Exon sequences
Seq C1 exon
CCAGCGGAGGCTCCACGAAGAGATGCAAAAGACATTCAAGAAGGAGGAGCAGCGTCACAATGATGTCCACGAGAGACTGGAGCACACCTCGCGAATCCTCCAGTTGGTCAAAGATTGCTTGGAGCATTTGGCCAACAAACTGAGTCACGTAAAACTG
Seq A exon
GTAGGCCCCGCCCTTTTAAATAACCCCCATTGATGCTCCGCCCCGGGGAGGCCCCACCCCAAGGAGCTCCACCCCAATGGACACTGTCCCTGGGAGGCCCCACTGCAGAACCTCTTCCACATTGAAAGCCCTAATCCATGCCTGGCAGCCCTGCCCATGTCCTCCCAGAGCGTCAGCGCAGTTGGCATAAAGATGCCACACAAGCCATAGGCTCCCAGCCCTGTCTCCTGCCCAGAATGCAAAGTTCCACACCATGCATCGCTGTCTTGGTCCTACATTCCGGGGGAAGTCCTCTTTTGCTCAGTCTCAAACTCTGACTCTAATGGGCAACCATCAGCCCAACTCAGGTGTCCCATGTCTATGGGGCGGTGCGGCCCTGGGTGAAGAAGGTCCCACTTTGTCCACAAGAGCTCCATTTCTTCAGAAAACCACCCTCACACTGGCCTAGGTCGTGTCATTAATCTCAAAGAGACCTCCATGTAGCTCAGATTCAAAGATTCCACCCTCAAGGCTAGGTTTTCATTTTAGAGGCCCTGCCCAGTAGTGGTAGACACGCACCTCAAAGCTATGAAAGCCCACTTGTTGGGTGAATCGTGTCCCCACCTAGGTGCACGGTATCTCTCAGCTAACTTGGCCCGTCCCCACCACAG
Seq C2 exon
GATGATACGGTATTGGCAGGAAAGAAGTTAGACCGGGACTCAGAGGACTACGCTTACAATCTGCTGGTAGTTGTCCAGGAAAAGCTGCTGAAACTGCAGGACCAACTGGAGAGCCAGGACGTGCCTGAGTTGCTGCGACACATAGCAGACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632:ENSMUST00000044926:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.321 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGGCTCCACGAAGAG
R:
CTCTCGGTCTGCTATGTGTCG
Band lengths:
310-960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types