HsaINT0029244 @ hg38
Intron Retention
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:HGNC:28303]
Coordinates
chr19:11422701-11424029:-
Coord C1 exon
chr19:11423877-11424029
Coord A exon
chr19:11422862-11423876
Coord C2 exon
chr19:11422701-11422861
Length
1015 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
TGGGGCTGGGTGGCCCGCAGTCG
3' ss Score
4.34
Exon sequences
Seq C1 exon
ACCCACCGCGAGCACCTGCTGCTACAGTCCGACGACACCATCCAGGACAGCCTGCATGCCAAGGAGGAGGAGCTGCGGCAGCGCTGGAGCATGTACCAGATGGAGGTGATCTTTGGCAAGGTCAAGGACGCCACTGGCACTGACGAGACGCAC
Seq A exon
GTGAGTTCTGCCCGCAGCCCTCTCCGCCGCGCCCCCCCCCCACCCCAGACGGGCCCCAGGGGTGCCTAAGCCGGTGAAACCGACACACCCTGTCTCCCCTCTCTGCCAGGTCGGTTATTCAGCTCACAAACCTGCTCCTTTCTTGAAAAACATCCCTTCCCCCTCCAGCTACCGTTCAGTTTTTCTGCTGCCCTTCGCAGCAAAACCCCTAGGAGCTGTCTACACTCGCCGTCATTTCTACACTCGCCTTCCGTTCTCTCTTGCACCATGCTAACTCCTTTGCCATGCCAGCTCTAGGAGAACTGGGAGTTTCGTCTCTTGTTCTGTCTCCAGTGTCTGTAACATGGTCTGGGACCCAGTGGACCGCCCAGTACCATCCTCAGATCCTGGCAAGTGGGGTCCCTGCGCCGGGTCCCTCACTGTAAAGTCTTCCTTGCATTATTCTAAGACCGCTGTGTCCCCCTTGGGTCCTGGTTCCCGCCGGTGAACACTGGACCCCAACCCTGTTTCTCCCCTCTGGGTGTCCGCCAACCTGCTGCTCCTCCGATGGGGCCGACCCCTGATGACTTCCGGGACTCCCACCTATAGGAGTACACCTATGGGGTCATCTGGGGCACTGAGGCGCAGCCCCTTTCCAGATGTGGGCCTTGTGAGCGGATGGCTCCGAAGACGGGCGGTATTTCCTGCGGAATCGGGCGAGATTCACGGCCAGAAATTGATGGCACTTTGATTTTGGAAAGAAGCTATGCTCGCCTCTCCAGTTGCCCCCGAGTTTGGGCTGACTCAAATTCCTTATATAGGCCAGAAAGGGCCCCGCAAAAATGATATATCCAGGGCTGCTCACCCTTGAAGCAACCCTGCGTCCAACCCACAGTGTCCCCATACATTGCTGTGCAAAAGGCGCCAGCTCAGGCCACCTGTCCTGCGTGCGAGGGTTCGCAGGGTGGGGGAGAGGAGGTGGAGCGCCCCTACGCTCCCTAGGCCCTGGCTCTGACTGGGGCTGGGTGGCCCGCAG
Seq C2 exon
TCGTTGGTGCGGCGGTTCCTGGCCCAGGGCGACACCTTCGCGCAGTTGGAGACGCTCAAGAGCGAGAACGAGCAGACGTTGGTGAGGCTGAAGCAGGAGAAGCAACAACTGCAGCGGGAGCTGGAAGACCTCAAGTACTCGGGGGAGGCCACGCTGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003:ENST00000356392:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=NA C2=0.241
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGCTGCTACAGTCCGA
R:
CTCACCAGCGTGGCCTCC
Band lengths:
302-1317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development